PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G1962
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 259aa    MW: 31618.9 Da    PI: 9.1428
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G1962genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.32.4e-2435118186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W+ qe+++ + +r e+++++ ++k++k+lWe +s +++e+g++rs++qCk+kw+nl +ryk ++  e++   ++++++p++++l+
  Gh_A01G1962  35 QWSIQETKEFLMIRAELDTNFMETKRNKQLWEFISTRLKEKGYNRSAEQCKCKWKNLVTRYKGCEMVEEEA--KRQQQFPFYNDLQ 118
                  7********************************************************************95..66678******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122032.08E-203499No hitNo description
PfamPF138376.0E-2035120No hitNo description
PROSITE profilePS500907.5153692IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEGLHHHQYY HRQHHQQQHQ QQAMNVNVDV DRLPQWSIQE TKEFLMIRAE LDTNFMETKR  60
NKQLWEFIST RLKEKGYNRS AEQCKCKWKN LVTRYKGCEM VEEEAKRQQQ FPFYNDLQAI  120
FSARKQTTLK KLCSDKEEDK GRYRGKEKGK KGVSISGSTS ESINDGNDIK EILKCFMRQQ  180
MEMEIQWREA LEERENERRL KEMEWRRTME ALENERVMMD IRWREKEEQR RIREEARSER  240
IDALVTTLLN KLTRDDHKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016749199.10.0PREDICTED: trihelix transcription factor GT-3b-like
SwissprotO804506e-55TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBLA0A1U8PG570.0A0A1U8PG57_GOSHI; trihelix transcription factor GT-3b-like
STRINGGorai.002G262900.11e-166(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22152870
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.11e-48Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]