PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G2119
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 744aa    MW: 81886.4 Da    PI: 5.9069
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G2119genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH222.8e-07144166427
                  ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                  ++C ff++ G C  GdrC F Hgp
  Gh_A01G2119 144 VPCIFFLK-GLCIKGDRCAFLHGP 166
                  59******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.8034170IPR000571Zinc finger, CCCH-type
PfamPF156631.2E-114296No hitNo description
SMARTSM003560.00184269IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.5127298IPR000571Zinc finger, CCCH-type
SMARTSM003560.0527497IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.061140167IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-4140166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-5141165IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-5144166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-4145166IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 744 aa     Download sequence    Send to blast
MVAATPPQQQ QQQQQKKQAA VATTTVTVAG ATKPSAEEEA LKRNTDCVYF LASPLTCKKG  60
SECEYRHSEY ARVNPRDCYY WLNGNCLNPK CGFRHPPLDG LLGTQATTPT GSSKPSSHTA  120
ATTAPASHMP YSQGASYSSG KHAVPCIFFL KGLCIKGDRC AFLHGPTTSN KATQLAATTT  180
ASEPHLLKKT FGAVEASQSQ KFPPTNVSNT VGLAPESKPS AKVKAAFTRS GTGTEKSVPS  240
PVGLDEELPR HKATKTTSVV NGGSMGHSGW LHQPHASDEQ TFHGSKDTEE FLRESSPGFD  300
VLVDDELRDS DFYHGEDQYG GTRGHEGRNV NEYDIGRPAN YDAMVDVDQE MFHDARGYDS  360
FDNVQGNYDW DQQRASSERM PLGSSTLERR GYSRVDSPDH VEESDLRHRL SKRRRVNGLK  420
SVVSHDNALE NCEGERNYRA GSQRDSHRLP PHERSLGSRL QGRIKLPGRS VNGSDLHSER  480
EIERGRNWGR HSPGKPQTSS QGRLRDRIKG KVEGDFNNNE GRNFGGPRIR REVTDGRNAD  540
FAGPKSLAEL KVGKNSDNKQ HQSLGKRRSV GDHQQIEGNL SFKGPMPLSE ILKRKRQSEG  600
AASGDGIASV NKEDVDQKQS KGSLISGSNN KEVSVTVKEA NKDEESKVAA TDIGITEATH  660
GESSQPLNMS EHEADADAED GIIGDERIED HEVEADDQRD GEYYYEQVDE GEYNYEDENV  720
DPEEEYIEEE DGDDFAKKLG VMFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1411415KRRRV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.153100.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016703239.10.0PREDICTED: zinc finger CCCH domain-containing protein 17-like
TrEMBLA0A1U8KRA00.0A0A1U8KRA0_GOSHI; zinc finger CCCH domain-containing protein 17-like
STRINGGorai.002G167900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89681215