PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A02G0101

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 1137aa MW: 129076 Da PI: 4.9317

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A02G0101	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	52.5	1.6e-16	7	154	3	128
NAM 3 pGfrFhPtdeelvveyLkkk.vegkkleleev.ikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgk...................rknra 77 +G+ F+P+d+ l+ yL+ + g++ ++++ di++++PwdLp+ +++ +++e +f ++ kya++k nra Gh_A02G0101 7 KGYGFKPSDQILI-GYLRDLtLFGRDYLVQDIiYLGHDICNYDPWDLPScdSITPNDSERFFIYPKTYKYANSKskvigtptrqvpngdqrqpMINRA 103 799********.77877625566655656625566*******53466668899*******9866555555555555554444444555 PP NAM 78 tksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 tk+g Wk +g +v+s +++++g+k+ L f +++ p+ kt+ ++h+++l Gh_A02G0101 104 TKNGNWKVSGDRVNVKSIddTQQVIGIKTRLYFKHNSCPN--KTTCMLHQFEL 154 *******9999887667888*****9766666..*******87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	20.605	5	172	IPR003441	NAC domain
Pfam	PF02365	4.0E-5	7	154	IPR003441	NAC domain
SuperFamily	SSF101941	8.11E-17	7	172	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1137 aa Download sequence Send to blast
MNNPKLKGYG FKPSDQILIG YLRDLTLFGR DYLVQDIIYL GHDICNYDPW DLPSCDSITP 60 NDSERFFIYP KTYKYANSKS KVIGTPTRQV PNGDQRQPMI NRATKNGNWK VSGDRVNVKS 120 IDDTQQVIGI KTRLYFKHNS CPNKTTCMLH QFELVGIDPC QDKYFLGKVI MKEFKPTNIS 180 SNNIDDRISI PQVRVELGPE PSVETQVTNE YEWTQSEQTN QFITSYPVFD SENFIDDGNE 240 VISYHQSQVR VELGSEPLVE TEVANEYGWT QSEQTNEFIT PRPVFDIDDG NEVISNHQSQ 300 INMELIRSLE VPNIGIEDQN QSYKNIGIDN DRTVPDGSNQ HNIVAAAENE SSILPSNLQD 360 HLIDFINHME WSDLYNLCRR KDDGLFLDEL FDEPQELGPQ NQCGINQQVA AGAEIECTNL 420 PPLDVAESSY STDSVRKRLA MEVEGSGTGV ETELAQQQAK RTVSLCFIEV LNLCFACCCR 480 SDLYRFAAAV GSDCVEILSQ IKHQEKLLNL KRRWLMGLST SRSKKKQFKE PEFFKCKTLP 540 ESFLRENDMF YEIIKAHVQD AFGASNSRRG NHVIQDDVQS FDASKITGVL FSYLDALTND 600 GLHLIVMILS GGSGMIKKTQ CEMKKAIRES LPSFLSNKNL EHEQKTSIMQ LYKILNDPKN 660 FRNNTMKPMT PTSLFHHAAA IQVLDGLEDL PFQTLIAMDR KLSCVKTVPQ LKTRERGQKR 720 KRLVQKVGKT ARRMLMDLDG EGKLQGPLAK ALAVADLSLN LTTGCQNSST TSFLQFTPEI 780 VSLQNDIVKA IWTLKTKARF PELKALQLLL DPNIEIATRS LRGAIIDALT EFLFECSDMN 840 TIPKSFLEAL SVINRDSRSL PNKISRSLPH QSFLKDEIEE EVECILSVSA EMKQIFWDLL 900 PDHELDEEFA DAYGEALEGS DDDSCIEDSG CYENDWKMVN KDLESCMSHS VKSIERDEVI 960 QDVKMDPEYA SSNAKSSEDK NRVKNKAPFS SPRGELNRRS IERDEVEQKI GVDPENASNE 1020 RFADNKTSKC RNRYLAIQEA CDETSLVAHK LIGRLLEKFA KEQDMDLDWS DSLYLGGDSS 1080 TQQHIQGQEK KQKLTEEDMG DNLIGTLKEL MPFVTKRMLV ERIKKAIVSY PQKFVVN

Sequence ? help Back to Top

Protein Sequence Length: 1137 aa Download sequence Send to blast

MNNPKLKGYG FKPSDQILIG YLRDLTLFGR DYLVQDIIYL GHDICNYDPW DLPSCDSITP  60
NDSERFFIYP KTYKYANSKS KVIGTPTRQV PNGDQRQPMI NRATKNGNWK VSGDRVNVKS  120
IDDTQQVIGI KTRLYFKHNS CPNKTTCMLH QFELVGIDPC QDKYFLGKVI MKEFKPTNIS  180
SNNIDDRISI PQVRVELGPE PSVETQVTNE YEWTQSEQTN QFITSYPVFD SENFIDDGNE  240
VISYHQSQVR VELGSEPLVE TEVANEYGWT QSEQTNEFIT PRPVFDIDDG NEVISNHQSQ  300
INMELIRSLE VPNIGIEDQN QSYKNIGIDN DRTVPDGSNQ HNIVAAAENE SSILPSNLQD  360
HLIDFINHME WSDLYNLCRR KDDGLFLDEL FDEPQELGPQ NQCGINQQVA AGAEIECTNL  420
PPLDVAESSY STDSVRKRLA MEVEGSGTGV ETELAQQQAK RTVSLCFIEV LNLCFACCCR  480
SDLYRFAAAV GSDCVEILSQ IKHQEKLLNL KRRWLMGLST SRSKKKQFKE PEFFKCKTLP  540
ESFLRENDMF YEIIKAHVQD AFGASNSRRG NHVIQDDVQS FDASKITGVL FSYLDALTND  600
GLHLIVMILS GGSGMIKKTQ CEMKKAIRES LPSFLSNKNL EHEQKTSIMQ LYKILNDPKN  660
FRNNTMKPMT PTSLFHHAAA IQVLDGLEDL PFQTLIAMDR KLSCVKTVPQ LKTRERGQKR  720
KRLVQKVGKT ARRMLMDLDG EGKLQGPLAK ALAVADLSLN LTTGCQNSST TSFLQFTPEI  780
VSLQNDIVKA IWTLKTKARF PELKALQLLL DPNIEIATRS LRGAIIDALT EFLFECSDMN  840
TIPKSFLEAL SVINRDSRSL PNKISRSLPH QSFLKDEIEE EVECILSVSA EMKQIFWDLL  900
PDHELDEEFA DAYGEALEGS DDDSCIEDSG CYENDWKMVN KDLESCMSHS VKSIERDEVI  960
QDVKMDPEYA SSNAKSSEDK NRVKNKAPFS SPRGELNRRS IERDEVEQKI GVDPENASNE  1020
RFADNKTSKC RNRYLAIQEA CDETSLVAHK LIGRLLEKFA KEQDMDLDWS DSLYLGGDSS  1080
TQQHIQGQEK KQKLTEEDMG DNLIGTLKEL MPFVTKRMLV ERIKKAIVSY PQKFVVN

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.3495	0.0	ovule

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	73863984	0.0

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX577476	6e-32	JX577476.1 Gossypium hirsutum clone NBRI_GE9311 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017633690.1	0.0	PREDICTED: uncharacterized protein LOC108476109
TrEMBL	A0A1U8LHI9	0.0	A0A1U8LHI9_GOSHI; uncharacterized protein LOC107927457
STRING	Gorai.005G013400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18349	4	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33060.2	4e-18	NAC 014