PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A02G0105
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 1564aa    MW: 180770 Da    PI: 6.6629
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A02G0105genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS64.12.9e-2097371100374
         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfe..fnvlvakrledleleeLr 195
                  + I +a+ g++r+H iDf+i +     + l++L s ++gp  + +  + +p  ++    +     L++ Ae ++v++e   +v++ ++l++++  e++
  Gh_A02G0105  97 KVIDDALMGNRRLHLIDFSIPYYYFDGSVLRTLPSFSGGPLLVHVSYILPPFLKKYVDFKLQMGILTRDAEVVNVKLEdeLKVVYGNSLAEVDECEID 194
                  56899*********************************************999999999999999***********96337788999**********9 PP

         GRAS 196 vkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                  +k+   +E+++V   ++l +l+++  ++e      L  +k+++P++v++ +  ++h++++Fl+ + ++++yys     +        + +i + +   
  Gh_A02G0105 195 FKRrreDEMVVVYYKFKLDKLVRDAKAMEG----ELVRLKEINPTIVIMLDFYSNHSHSNFLTCLEDSFQYYSNTSTLIW------RQPNIYLNEY-- 280
                  999999****************99999999....89999*********************************98644442......3455666666.. PP

         GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplseka...akqaklllrkvk.sdgyrve....eesgslvlgWkdrpLvsvSaWr 374
                   ++ +n    eg++ + rh+tl++W++ +++aGF+ +pl+++     ++ +   r+++  d  ++     ee+++l+lg k+ +++++SaW+
  Gh_A02G0105 281 -EWDCNRDESEGNNVIRRHQTLSEWQRLFSMAGFTRIPLNHNKdnlSDEGSFFGRNYYwLDNTNLLetmgEEEECLILGYKGCRMFFLSAWK 371
                  .566888899****************************9876511145677788888876665544366688*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098517.7991343IPR005202Transcription factor GRAS
PfamPF035141.0E-1797371IPR005202Transcription factor GRAS
PROSITE profilePS508089.626636690IPR003656Zinc finger, BED-type
SMARTSM006147.0E-14636686IPR003656Zinc finger, BED-type
SuperFamilySSF576676.31E-6639688No hitNo description
PfamPF028922.1E-5639679IPR003656Zinc finger, BED-type
SuperFamilySSF530981.44E-407801216IPR012337Ribonuclease H-like domain
PfamPF143722.2E-109951086IPR025525hAT-like transposase, RNase-H fold
PfamPF056991.5E-1811371215IPR008906HAT, C-terminal dimerisation domain
PROSITE profilePS5060010.15913941564IPR003653Ulp1 protease family, C-terminal catalytic domain
PfamPF029022.7E-714251563IPR003653Ulp1 protease family, C-terminal catalytic domain
SuperFamilySSF540011.22E-1514251564No hitNo description
Gene3DG3DSA:3.30.310.1302.2E-514701529No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0003677Molecular FunctionDNA binding
GO:0008234Molecular Functioncysteine-type peptidase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1564 aa     Download sequence    Send to blast
MASSPFDTDT ALRLLLFCAE AIEDGDLKSA DAFLQNILVL ADESPYLYES RMVRYFADAL  60
VRRAYGLHPA SSYNTFPGNP APYYHYNGYG INGVIKKVID DALMGNRRLH LIDFSIPYYY  120
FDGSVLRTLP SFSGGPLLVH VSYILPPFLK KYVDFKLQMG ILTRDAEVVN VKLEDELKVV  180
YGNSLAEVDE CEIDFKRRRE DEMVVVYYKF KLDKLVRDAK AMEGELVRLK EINPTIVIML  240
DFYSNHSHSN FLTCLEDSFQ YYSNTSTLIW RQPNIYLNEY EWDCNRDESE GNNVIRRHQT  300
LSEWQRLFSM AGFTRIPLNH NKDNLSDEGS FFGRNYYWLD NTNLLETMGE EEECLILGYK  360
GCRMFFLSAW KPKVEDGHFN SISTNHQFRQ GFNPNPLPLQ PLQPFIEGLT LNRLAAFSEI  420
YDILKYLGCR YKFLLVLTWA FKVNNIRETT WGSNEKFPFS TQSTYCYMKD YKTYQFMHHC  480
EKRKLVSISV KKAFESRDGY HFEPSVAKLD KQDHPNLLNV KDYNIDVVVA ICLQNRHTSN  540
EVYIVEFCWP ATESEISKSL ALRIFDDLKH MKATFVTVKV QGTEIKFQEE AISSIPTSSN  600
TAMPLKIAEE ARDIHAIEIN GHIEQIGKTK RNKQRKSWSK VWVDFDKFEE DGKQVAKCKH  660
CPKVLTGSSK SGTTHLNNHS KVCPGKKKQN QESQLILPVD TNERSSTFDQ ERSHLDLVKM  720
VIKHQYPLDL AGQEAFKNFV KGLQPMYEFQ SRDKLLSDIH RIYNEERKKL QLYFDQLACK  780
LNLIVSLWKN NHGKTAYCCL IARFIDDGWE LKMKILGLRK LEHVYDTKVV GGIIRSFVLD  840
WNISKKVCSI TVDNSFLNDG MVHQIKEICV SEQGSLSSAH WFISFTLLED GFREMDSILS  900
KLWKSIEYVT ETTHGKLNFQ EAVNQVKLQG GKSWDELSFK LESDSDILDN ALRSREIFCK  960
LEQIDDNFML NLSMEEWEKA VTLQSCFKCF DDIKGTQSLT ANLYFPKLCN MYEEFGQLKK  1020
NNHPFVILMK RKFGNYWSLC NVAFTIAAAL DPRLKFRSSC NETYELESMM KLIRFRKVLM  1080
DVYFEYANEA KNLSASSSVL DDSNSLTAET TKDCIVSYFS KFASPSNVKK VASQKSELDC  1140
YLEETLLPSD ADILGWWRVN SQRFPTLAKM ARDFLAIPVS VSAPCSNISA MTTNPTYSSL  1200
DPESMEALVC SQNWLESTKE NDGEHHEPMQ NMDKRKRKME ENGTSTVKVF KNRTHEKASS  1260
NGDIASDFNK NDGSLSFDNW MEPQCSSSES VGEKAEIMEA SVRNRDRLES SIGKPNRGRN  1320
IAASIEIPND EPSFNSNQLD QFQSSSSESD EETTLREQGS WCREDVRTYL VSSFTDKEKK  1380
RLNRWERSEL SGKLIGRDKE FKLMGEKLTP LLMVPHCDET LMRYYIDDSV VNAFFKLLKK  1440
RSDKYPNVYI KHYSFDPQIA TCLIKGSKLE GEVLAWFKAE KLRGVHKLFL PMCLSAHWVL  1500
FCVDTREKKI SWLDPIPSSR IKSNNVEKQI ILQWFTNCLL PEFGYNDADE WPFVVRTDIP  1560
KQEN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.31030.0ovule
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1098835370.0
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5891386e-51JX589138.1 Gossypium hirsutum clone NBRI_GE23769 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016714016.10.0PREDICTED: uncharacterized protein LOC107927468 isoform X2
TrEMBLA0A1U8LHD20.0A0A1U8LHD2_GOSHI; uncharacterized protein LOC107927468 isoform X2
STRINGGorai.005G015100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8809420
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.17e-29GRAS family protein