PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A02G0106
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 392aa    MW: 46328.5 Da    PI: 4.9622
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A02G0106genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS69.65.9e-22132753267
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdg...dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                  +lLl+ Aea++++dl++a++lL+++  la ++    +   R+++yf+ AL +r ++  +      +  +      ++ + +  + ++   i  +   +
  Gh_A02G0106  13 RLLLSSAEAIEDRDLKRADELLQKILILADQRTycsRDQSRVVKYFADALVRRAYGLHPAS----SYFTF----PVDPAPY--YHYNSYHINGVIKKV 100
                  79*********************99888665553336899****************22221....11222....2233222..345555566777777 PP

         GRAS  98 aNqaIle..avegeervHiiDfdisqGlQWp..aLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfe..fnvlvakrledl 189
                     a++e  a +g++r+H iDf+i +   +   + l++L + +++p  +R+  + +p  ++  e  +  e L+k A el+v++e   +v++a++l+++
  Gh_A02G0106 101 IDDALMEknASNGNRRLHLIDFSIPYYNNYFegSVLRTLPTFSGDPLPVRVSYILPPFLKKYVEFFSQMEFLTKDAMELNVKLEdeLKVVYANSLAEV 198
                  88888872245566****************7568**********************988887888888889************644788999****** PP

         GRAS 190 eleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                  +  +L++k+   +E+++V   ++lh+l+++  ++e      L  +k+++P++v++ +  ++h++++Fl+ f ++++y s  
  Gh_A02G0106 199 DEYKLDFKTrreDEMVVVYYKFKLHKLVRDAKAMER----ELVRLKEINPTIVIMLDFYSNHSDSNFLTCFKDSFQYSSNT 275
                  ******999999****************99888888....8999********************************98865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098518.3211375IPR005202Transcription factor GRAS
PfamPF035142.0E-1913275IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MDYDLFDTET ALRLLLSSAE AIEDRDLKRA DELLQKILIL ADQRTYCSRD QSRVVKYFAD  60
ALVRRAYGLH PASSYFTFPV DPAPYYHYNS YHINGVIKKV IDDALMEKNA SNGNRRLHLI  120
DFSIPYYNNY FEGSVLRTLP TFSGDPLPVR VSYILPPFLK KYVEFFSQME FLTKDAMELN  180
VKLEDELKVV YANSLAEVDE YKLDFKTRRE DEMVVVYYKF KLHKLVRDAK AMERELVRLK  240
EINPTIVIML DFYSNHSDSN FLTCFKDSFQ YSSNTCICWE ESKNDFYGNE YWWNCNRDPW  300
GDTYNDFGGN EYWWECNRDA CEGNNLIRRH QTLSEWQRLF SMGGFSRIPL NHTKDDLSDE  360
EKCLLLIMRH LLVNQTSLKI MGEEEECLIL GY
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO722783956e-61
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016714020.10.0PREDICTED: DELLA protein GAI-like
TrEMBLA0A1U8LHK70.0A0A1U8LHK7_GOSHI; DELLA protein GAI-like
STRINGGorai.005G014000.11e-180(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3546622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.12e-28GRAS family protein