PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A02G0114
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 499aa    MW: 58630.2 Da    PI: 5.38
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A02G0114genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM509.4e-1671321128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiy..kvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  +p G++F+P+ +e+   +L + v+g+ l+  + + +vdiy  + ePw++    k+++++++ F+k +kk  ++ r  r++ sg W a    kev++ +
  Gh_A02G0114   7 VPHGYQFRPSRQEIFILFLFPIVTGECLPS-SPLIQVDIYgeNKEPWNIF-D-KNSKTSYWVFTKLKKK--SKLRIDRTAGSGCWLARNA-KEVYDDS 98 
                  589************************999.67889999933469****6.2.2334455566666555..468************8865.999999* PP

          NAM  97 gelvglkktLvfy..kgrapkgektdWvmheyrl 128
                  g+l g  k ++f   + +  +  + +W+mhe++l
  Gh_A02G0114  99 GKLLGYHKYFTFSckNDECMNLDNGHWIMHEFSL 132
                  ************9533355566799*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-213148IPR003441NAC domain
PROSITE profilePS5100523.727148IPR003441NAC domain
PfamPF023651.5E-98132IPR003441NAC domain
PfamPF045025.5E-32383473IPR007590CWC16 protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MLNSSPVPHG YQFRPSRQEI FILFLFPIVT GECLPSSPLI QVDIYGENKE PWNIFDKNSK  60
TSYWVFTKLK KKSKLRIDRT AGSGCWLARN AKEVYDDSGK LLGYHKYFTF SCKNDECMNL  120
DNGHWIMHEF SLKREDSNDS VICEIRNKNA ADSDSDSKLN MKKRRILSSK KNHEEMNLPS  180
KPNDEEMGLI SIFSSSDDKD LSSDVTFETR NRNDGLDLNL NLKLNEENTR FYVNCEDPKV  240
IYKDVAGSNL NSNKLELDDE EMESISRFSN SNHEDLSSDV TFGIGYRNDS LGLNLNLKSK  300
DEDMRFYINY EDENRHYLRQ NIRISDDSPF YIFPNFIIES NKFEEENLFK SIYENLSKSE  360
NGLRSVEASE GPAAEESTDE GWSIRYKTCG NYIYQGTKFN SRKEDVISET SKGIRMHRFY  420
FKCTNCFAEM TIKTDPQNKN YVFESGATRN FEHWRSEDVE VERERERERE TEKKISRDGW  480
RTERWIQKER WTSLLHLIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzg_Y5e-2238247039128Coiled-coil domain-containing protein 94
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016713938.10.0PREDICTED: NAC domain-containing protein 19-like
TrEMBLA0A1U8LKG20.0A0A1U8LKG2_GOSHI; NAC domain-containing protein 19-like
STRINGGorai.005G016000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3546722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.11e-09NAC domain containing protein 32