PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A02G0122

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 250aa MW: 28550.4 Da PI: 8.122

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A02G0122	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	90.8	1.9e-28	92	179	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+++g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+p Gh_A02G0122 92 FYNAYATRVGFIIRVSKLSRSRHDGSAIGRALVCNKEGFRMPDKRE--KIMRHRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLMP 179 ****************************************9988..99***********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.9E-26	92	179	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MINNFISINV EFRVHGDGNG GMMLNPVQAE ASSSMENDNE TGENPVEGVF QPGLNEKLDR 60 TSPQRDDIPE IVLADEPYVG QEFESEASAH AFYNAYATRV GFIIRVSKLS RSRHDGSAIG 120 RALVCNKEGF RMPDKREKIM RHRAETRVGC RAMILVRKVS SGKWVVTKFV KEHTHPLMPG 180 KGRTDCIYDQ NPNEHDKIRE LTHQLAIEKK RSATYKRHLE LIFEQIDEYN KSLSKKIQHM 240 VDGVREIENK

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX579447	1e-114	JX579447.1 Gossypium hirsutum clone NBRI_GE11686 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017632325.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 12-like
TrEMBL	A0A1U8LH08	1e-180	A0A1U8LH08_GOSHI; protein FAR1-RELATED SEQUENCE 12-like
STRING	Gorai.005G016700.1	1e-171	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7302	25	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-106	FAR1 family protein