PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A02G0124

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 260aa MW: 29778.9 Da PI: 8.4082

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A02G0124	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	89.3	5.5e-28	89	177	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYAk++GF +r+ +s+k + +g+i++r++ C+keg++++++k+ + + r+r+++r gC a+++vk+ek gk+ +tk+++eHnH+l+ Gh_A02G0124 89 FYDEYAKRMGFLTRIISSRKCELDGSIIHRRLACNKEGFNQNKQKSIRVRVRKRESKREGCMARMNVKREKPGKYIITKFVKEHNHPLF 177 9*******************************************999************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-24	89	177	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MERIVITESC IKGESGISEA DKSKEDKVLI RESCLDGESG VTEVEKSKEE KILVTKSCGG 60 DESGLCKLNL NQEPYEGMLF ESMQAAKAFY DEYAKRMGFL TRIISSRKCE LDGSIIHRRL 120 ACNKEGFNQN KQKSIRVRVR KRESKREGCM ARMNVKREKP GKYIITKFVK EHNHPLFVTS 180 GKDQPYTDDK DKKIQELSSK LNQANEELVS CREQLCAFLA SIEEQANQLS KKVEGVVRNI 240 KEVESRDHHS HNLEHSWCSR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016713896.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A1U8LH16	0.0	A0A1U8LH16_GOSHI; protein FAR-RED IMPAIRED RESPONSE 1-like
STRING	EOY04866	1e-114	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19294	7	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	8e-50	FAR1 family protein