PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A02G0150
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 257aa    MW: 30291.9 Da    PI: 5.4022
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A02G0150genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM88.71.1e-2731322128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                    GfrF+Ptdee++ e L +kv+g++ +e++++i + +iy++eP++L+ +  ++  +++e y++++r++ +      + ++ +g Wkat + k+v s 
  Gh_A02G0150   3 LTGFRFSPTDEEII-EILSQKVSGNTsMEAFDFIIQKNIYDFEPQELHgSerTIGLNKNERYYYCRRESDS------REVMGKGWWKATSHLKAVSSP 93 
                  57************.88****999997899999**************8424455568889******98753......44889**************** PP

          NAM  96 kgelvglkktLvfy......kgrapkgektdWvmheyrl 128
                  +ge++g k+ L+f+      + +++++ ktdW+mhey l
  Gh_A02G0150  94 NGEVMGYKRPLTFHrfkdniQRNRKEAIKTDWIMHEYGL 132
                  **************88777657788889*********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100532.1822147IPR003441NAC domain
SuperFamilySSF1019419.55E-303147IPR003441NAC domain
PfamPF023651.0E-154131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MVLTGFRFSP TDEEIIEILS QKVSGNTSME AFDFIIQKNI YDFEPQELHG SERTIGLNKN  60
ERYYYCRRES DSREVMGKGW WKATSHLKAV SSPNGEVMGY KRPLTFHRFK DNIQRNRKEA  120
IKTDWIMHEY GLQSIHTEWR LCKIKYKGKE KVEEDMTPTE KTFRHSTNKT LLTSFEAKDC  180
SSGSSNSIAP MQLELAFEQP PLTQPILPVN NDINYYYDNY CWSNSNMMLY EDHQLADQLD  240
TLSEQPFSDL WSWDDYH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-14515018171Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5862413e-58JX586241.1 Gossypium hirsutum clone NBRI_GE20018 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481594.11e-180PREDICTED: putative NAC domain-containing protein 94
TrEMBLA0A2P5XL830.0A0A2P5XL83_GOSBA; Uncharacterized protein
STRINGGorai.005G020600.11e-179(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16224614
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.15e-18NAC domain containing protein 94