PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A02G0182

Common Name

HSF13

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HSF

Protein Properties

Length: 495aa MW: 55737.3 Da PI: 5.3884

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A02G0182	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	110.7	1e-34	25	115	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+y++++d+++++++sws+n++sfvv+++ +fa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF+++ F k++++ll++i+ Gh_A02G0182 25 FLIKTYDMVDDSSTDDIVSWSSNKKSFVVWNPPDFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEDFVKDQRHLLKNIH 112 9**************************************************************999.........****************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k Gh_A02G0182 113 RRK 115 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	1.5E-60	21	114	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	2.31E-35	21	114	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	2.1E-37	21	114	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.4E-30	25	114	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.5E-19	25	48	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.5E-19	63	75	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	64	88	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.5E-19	76	88	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence Send to blast
MDPTAPSASV VGGGCGGGGG GPAPFLIKTY DMVDDSSTDD IVSWSSNKKS FVVWNPPDFA 60 RLLLPTYFKH NNFSSFIRQL NTYGFRKIDP ERWEFANEDF VKDQRHLLKN IHRRKPIHSH 120 SNPQGSLIDH ERAGYEEEIE KLSREKAALE ADVLRSEQER SSLKHQVEEL TQQADQMERR 180 QETLFNFLEK ALQDPAFAEH LFRRIESMDD VAAYNKKRRL PQIDQTKPVG DHSILDNKSC 240 STPEFGNVVH LDFSNKLRLE LSSAVSEINL VSQSTQSSNE DEGSPQRRVS QGEPKDDNIR 300 PQGLLFTPKT LDISDTGTSF TFNMDSSFSQ RVSMNESPAL HSLQQRLSSS EEPDSHISCQ 360 LNLTLASSSL QVNKSPILTR MSQPSWEIGK VSESRSNANS KDSDSRPFHS RRNMIDGETT 420 LSSSKDGPNT NQEPTAAPVR VNDVFWEQFL TERPGSSDNE EASSNYRANP YEDQDDKRSG 480 HGLARNTKNI EQLSL

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence Send to blast

MDPTAPSASV VGGGCGGGGG GPAPFLIKTY DMVDDSSTDD IVSWSSNKKS FVVWNPPDFA  60
RLLLPTYFKH NNFSSFIRQL NTYGFRKIDP ERWEFANEDF VKDQRHLLKN IHRRKPIHSH  120
SNPQGSLIDH ERAGYEEEIE KLSREKAALE ADVLRSEQER SSLKHQVEEL TQQADQMERR  180
QETLFNFLEK ALQDPAFAEH LFRRIESMDD VAAYNKKRRL PQIDQTKPVG DHSILDNKSC  240
STPEFGNVVH LDFSNKLRLE LSSAVSEINL VSQSTQSSNE DEGSPQRRVS QGEPKDDNIR  300
PQGLLFTPKT LDISDTGTSF TFNMDSSFSQ RVSMNESPAL HSLQQRLSSS EEPDSHISCQ  360
LNLTLASSSL QVNKSPILTR MSQPSWEIGK VSESRSNANS KDSDSRPFHS RRNMIDGETT  420
LSSSKDGPNT NQEPTAAPVR VNDVFWEQFL TERPGSSDNE EASSNYRANP YEDQDDKRSG  480
HGLARNTKNI EQLSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	7e-21	11	114	16	129	Heat shock factor protein 1
5d5v_B	7e-21	11	114	16	129	Heat shock factor protein 1
5d5v_D	7e-21	11	114	16	129	Heat shock factor protein 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.19829	0.0	boll\| ovule

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ748616	0.0	KJ748616.1 Gossypium hirsutum HSF13 (HSF13) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001314354.1	0.0	heat stress transcription factor A-5-like
Swissprot	Q94BZ5	1e-170	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A075QPU5	0.0	A0A075QPU5_GOSHI; HSF13
STRING	Gorai.005G027500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10134	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-172	HSF family protein

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]