PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A02G0464
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 441aa    MW: 47874.9 Da    PI: 6.9856
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A02G0464genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.61.5e-114467326
                 S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                 ++ C +++rtG+C yG+rC+F+H+
  Gh_A02G0464 44 EADCIYYLRTGFCGYGSRCRFNHP 67
                 689********************8 PP
2zf-CCCH30.65.7e-1090114327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++ C++++rtGtC++G +Ck++H++
  Gh_A02G0464  90 QPVCQYYMRTGTCRFGFSCKYHHPK 114
                  689********************96 PP
3zf-CCCH39.21.2e-12136159326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                  +++C+++++tG Ck+G++C+F+H+
  Gh_A02G0464 136 EKECSYYMKTGRCKFGATCRFHHP 159
                  689********************8 PP
4zf-CCCH36.96.2e-12298322327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  +++C+++++tG Ck+G++Ck++H+p
  Gh_A02G0464 298 QSECQYYLKTGDCKFGSSCKYHHPP 322
                  679********************97 PP
5zf-CCCH25.13.1e-08345368427
                  ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                  ++C ++++   Ck+G  CkF H++
  Gh_A02G0464 345 PPCTHYSQHEVCKFGLACKFDHPM 368
                  89******99************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003569.9E-64168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1924169IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-64470IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-94467IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-54767IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.28187115IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-587114IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-890114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-690115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-492114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.549133161IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-5133160IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-6134161IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-10136159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-5139159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.328295323IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6297323IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-4297322IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-9298322IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-5301322IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.427341369IPR000571Zinc finger, CCCH-type
SMARTSM003560.015341368IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-5345368IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-5345372IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MEWGPESDLE PEWTSSEPET GPEEPIQRLE LGIEPKSYPE RPNEADCIYY LRTGFCGYGS  60
RCRFNHPHDR AMVMGPGISS IGEYPERAGQ PVCQYYMRTG TCRFGFSCKY HHPKERGGFV  120
IHVPLNSYGY PLRLGEKECS YYMKTGRCKF GATCRFHHPI SSVVQVSTPS STPQVPHVPT  180
PVPTPTLYST VQSPSSLSSQ QYGVVMARPP LMPGSYVQGP YGSLLLSPSM VSFPSWNPYP  240
GLVNSSTQPS VGSRSVFGGT PLSPSAPAYT RSYQLVSSSV GSSSSNQNEQ LFPEIPNQSE  300
CQYYLKTGDC KFGSSCKYHH PPEVVAPKLD VILSTLGLPL RSGAPPCTHY SQHEVCKFGL  360
ACKFDHPMEQ LSYSPSTSSL SDIPVGSTIA TLAPSSDLRP KLLSGSGKDS DLVVMSSSVS  420
SSSESIGLVF SEGATIPHSS T
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017639996.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like
SwissprotQ84W911e-133C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A2P5WSY70.0A0A2P5WSY7_GOSBA; Uncharacterized protein
STRINGGorai.005G058800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-120C3H family protein