PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A02G0579

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SBP

Protein Properties

Length: 1041aa MW: 115941 Da PI: 7.688

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A02G0579	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.1	1.7e-40	158	235	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvC+vhska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Gh_A02G0579 158 VCQVEDCRADLSKAKDYHRRHKVCDVHSKATKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHP 235 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.0E-31	156	220	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.077	156	233	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.83E-37	157	237	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.5E-28	159	232	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	4.51E-7	807	938	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	7.3E-6	810	926	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.16E-6	811	922	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1041 aa Download sequence Send to blast
MEGKFGGKPH HFYGPTVSDL KAAEKKSVEW DLNDWKWDGD LFTATPLNPV PSDCRSRQLF 60 PDGPENAPNA GPSHSSSSCS EHSSPGNEKG KRKMQNKKRA VVVLDDDDDD DNDDDDDGVK 120 GDAGSLKLQL GGQVYPIMDE DAKCGKKTKV TGTPCRAVCQ VEDCRADLSK AKDYHRRHKV 180 CDVHSKATKA LVGNVMQRFC QQCSRFHVLQ EFDEGKRSCR RRLAGHNRRR RKTHPDNLPT 240 ANSLNDERNS SFLLISLLRI LSSMHSNNSD QAKDQDLLAH LLRSLANVAC STNGRNLSGF 300 LQGFHGAANA GRSLGNLEKP NDVVSGSTEH VRPSGSASKI DGCANLAEWQ GAMGYCGTVP 360 TSDLSHRRAN NDAQDGILSG SPSRTLIWSG AGFQPRASET GDTVERIRID KIDLNNVYDD 420 SQDYVENLER SLVLKNPVNG SLHGSVGVPE SLKSSPPQLS KNSDLTPSQS PSTSSGEAQS 480 RTDRIVFKLF GKNPNDFPIA LRRQILEWLS HSPTDIESYI RPGCIILTIY LCLRESAWEE 540 LCYDLGSSLR RLVDVSNDSF WKTGWVYARV QHSVAFIYNG RVVLDAPLPL KSHRNCKISS 600 IKPIAVSVTE RAQFVVKGFN LNQSSTRLLC AVEGKYLVQE TCYDLMDAVD PINEQDKLQH 660 LCFLCPIPNV SGRGFIEVED FGLSSTFFPF IVAEQEVCSE ICTLEGVIET AVPTVDINKN 720 EEKMETRNQA LDFIHEMGWL LHRNHLNRKL GDMNPNLNLF PFRRFKWLME FSMDHDWCAV 780 VKKLLGILFD RTVDLGDHSS MEFALLDMCL LHRAVRRNCR PMVELLLRYV PNKVLDKPGS 840 KQKLSVDGND YGFMFKPNVV GPAGLTPLHM VASREGCENV LDALTDDPGL VAIEAWKSAQ 900 DCTGLTPNDY ARLQGHYSYI HLVQRKINKK SECGYVVLDI PGTPLDCNSK QKLSDGTRSA 960 MAVSLEIQKI KKKPRQDGCK ACEKKLAYGN RTTSLVYRPT MLSMVAIAAV CVCVALLFKS 1020 SPEVLYVFRP FRWELLKYGS S

Sequence ? help Back to Top

Protein Sequence Length: 1041 aa Download sequence Send to blast

MEGKFGGKPH HFYGPTVSDL KAAEKKSVEW DLNDWKWDGD LFTATPLNPV PSDCRSRQLF  60
PDGPENAPNA GPSHSSSSCS EHSSPGNEKG KRKMQNKKRA VVVLDDDDDD DNDDDDDGVK  120
GDAGSLKLQL GGQVYPIMDE DAKCGKKTKV TGTPCRAVCQ VEDCRADLSK AKDYHRRHKV  180
CDVHSKATKA LVGNVMQRFC QQCSRFHVLQ EFDEGKRSCR RRLAGHNRRR RKTHPDNLPT  240
ANSLNDERNS SFLLISLLRI LSSMHSNNSD QAKDQDLLAH LLRSLANVAC STNGRNLSGF  300
LQGFHGAANA GRSLGNLEKP NDVVSGSTEH VRPSGSASKI DGCANLAEWQ GAMGYCGTVP  360
TSDLSHRRAN NDAQDGILSG SPSRTLIWSG AGFQPRASET GDTVERIRID KIDLNNVYDD  420
SQDYVENLER SLVLKNPVNG SLHGSVGVPE SLKSSPPQLS KNSDLTPSQS PSTSSGEAQS  480
RTDRIVFKLF GKNPNDFPIA LRRQILEWLS HSPTDIESYI RPGCIILTIY LCLRESAWEE  540
LCYDLGSSLR RLVDVSNDSF WKTGWVYARV QHSVAFIYNG RVVLDAPLPL KSHRNCKISS  600
IKPIAVSVTE RAQFVVKGFN LNQSSTRLLC AVEGKYLVQE TCYDLMDAVD PINEQDKLQH  660
LCFLCPIPNV SGRGFIEVED FGLSSTFFPF IVAEQEVCSE ICTLEGVIET AVPTVDINKN  720
EEKMETRNQA LDFIHEMGWL LHRNHLNRKL GDMNPNLNLF PFRRFKWLME FSMDHDWCAV  780
VKKLLGILFD RTVDLGDHSS MEFALLDMCL LHRAVRRNCR PMVELLLRYV PNKVLDKPGS  840
KQKLSVDGND YGFMFKPNVV GPAGLTPLHM VASREGCENV LDALTDDPGL VAIEAWKSAQ  900
DCTGLTPNDY ARLQGHYSYI HLVQRKINKK SECGYVVLDI PGTPLDCNSK QKLSDGTRSA  960
MAVSLEIQKI KKKPRQDGCK ACEKKLAYGN RTTSLVYRPT MLSMVAIAAV CVCVALLFKS  1020
SPEVLYVFRP FRWELLKYGS S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	7e-30	158	232	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	968	974	KIKKKPR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ622309	0.0	KJ622309.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016742099.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1 isoform X1
Refseq	XP_016742100.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1 isoform X1
TrEMBL	A0A1U8NVV0	0.0	A0A1U8NVV0_GOSHI; squamosa promoter-binding-like protein 1 isoform X1
STRING	Gorai.005G071400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3030	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1