PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A02G0736
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 212aa    MW: 24705.3 Da    PI: 9.0671
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A02G0736genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.81.7e-29959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien+snrqvt+skRrngi+KKA+E+ vLCda+v++iif+s+gk++ey+s
  Gh_A02G0736  9 KRIENSSNRQVTYSKRRNGIMKKAKEITVLCDAKVSLIIFASSGKMHEYCS 59
                 79***********************************************96 PP
2K-box881.8e-2971167197
        K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                  yqk+sgk+l++ak+e+l++e++++kke++++q e+Rhl+Ged++sL +keL+ Le++Le++l+ +R+k++++l +  ++++  e+++++ n   +++
  Gh_A02G0736  71 YQKTSGKKLWDAKHENLSNEIDRIKKENDSMQIELRHLKGEDITSLPYKELMALEDALENGLTCVRAKQMDVLDMAKKNTKFLEEDNKQLNFIVNQQ 167
                  899***************************************************************************************9988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.534161IPR002100Transcription factor, MADS-box
SMARTSM004329.4E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.59E-37296IPR002100Transcription factor, MADS-box
CDDcd002657.30E-43280No hitNo description
PRINTSPR004049.2E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.7E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-293859IPR002100Transcription factor, MADS-box
PfamPF014862.3E-1982161IPR002487Transcription factor, K-box
PROSITE profilePS5129714.24284170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MGRGKIEIKR IENSSNRQVT YSKRRNGIMK KAKEITVLCD AKVSLIIFAS SGKMHEYCSP  60
STKLIDILDQ YQKTSGKKLW DAKHENLSNE IDRIKKENDS MQIELRHLKG EDITSLPYKE  120
LMALEDALEN GLTCVRAKQM DVLDMAKKNT KFLEEDNKQL NFIVNQQQLT YENVREHMDH  180
HGYHQAARAD FNSQMPFAFR VQPMQPNLQE RM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A1e-17191183MEF2 CHIMERA
6bz1_B1e-17191183MEF2 CHIMERA
6bz1_C1e-17191183MEF2 CHIMERA
6bz1_D1e-17191183MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.237760.0boll| ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed during flower development in stamens and petals. {ECO:0000269|PubMed:17920788, ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ4098690.0FJ409869.1 Gossypium hirsutum MADS-12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016742051.11e-159PREDICTED: floral homeotic protein PMADS 2-like
SwissprotQ0HA251e-117MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLA0A1U8NSU41e-158A0A1U8NSU4_GOSHI; floral homeotic protein PMADS 2-like
STRINGGorai.005G087600.11e-157(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53002751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.19e-91MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]