PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A02G0904
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 68aa    MW: 8300.28 Da    PI: 6.0852
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A02G0904genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.61.8e-104166127
                     TSSS-HHHHHHHHHHHHHTTTT-HHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktI 27
                     r +WT+eE++++++a +++G+g W+ I
      Gh_A02G0904 41 REKWTEEEHQRFLEALRLYGSG-WRQI 66
                     789*******************.*998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.170.102.1E-11139IPR000789Cyclin-dependent kinase, regulatory subunit
SuperFamilySSF556371.22E-10241IPR000789Cyclin-dependent kinase, regulatory subunit
PRINTSPR002961.1E-5317IPR000789Cyclin-dependent kinase, regulatory subunit
SMARTSM010840.0023354IPR000789Cyclin-dependent kinase, regulatory subunit
PfamPF011111.1E-9440IPR000789Cyclin-dependent kinase, regulatory subunit
PRINTSPR002961.1E-51832IPR000789Cyclin-dependent kinase, regulatory subunit
SuperFamilySSF466892.02E-73266IPR009057Homeodomain-like
PROSITE profilePS5129411.1623668IPR017930Myb domain
TIGRFAMsTIGR015571.6E-74066IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.607.1E-64166IPR009057Homeodomain-like
PfamPF002493.3E-84166IPR001005SANT/Myb domain
CDDcd001670.001544366No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007049Biological Processcell cycle
GO:0003677Molecular FunctionDNA binding
GO:0016538Molecular Functioncyclin-dependent protein serine/threonine kinase regulator activity
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    Send to blast
MGQIQYSEKY FDDTYENRNV VLHPEVAKLL PKNHLLSDHQ REKWTEEEHQ RFLEALRLYG  60
SGWRQIEV
Functional Description ? help Back to Top
Source Description
UniProtBinds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function. {ECO:0000250}.
UniProtBinds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17443292}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026417785.11e-15cyclin-dependent kinases regulatory subunit 1
SwissprotA2XCH84e-16CKS1_ORYSI; Cyclin-dependent kinases regulatory subunit 1
SwissprotQ6PS574e-16CKS1_ORYSJ; Cyclin-dependent kinases regulatory subunit 1
TrEMBLA0A2P5YUT32e-41A0A2P5YUT3_GOSBA; Cyclin-dependent kinases regulatory subunit
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63562644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.21e-12MYB_related family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Guo J,Song J,Wang F,Zhang XS
    Genome-wide identification and expression analysis of rice cell cycle genes.
    Plant Mol. Biol., 2007. 64(4): p. 349-60
    [PMID:17443292]