PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A02G0931
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family FAR1
Protein Properties Length: 234aa    MW: 26945.4 Da    PI: 8.0944
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A02G0931genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR192.74.8e-2970157291
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                  fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++  k  r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+lap
  Gh_A02G0931  70 FYNAYATRVGFIIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDKRE--KIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLAP 157
                  ******************************************9988..9**************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-2670157IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MVLNSVQAEA SSMENENETG ENPVEETFQQ ELNEKVEQIS PGRDDIPEGI PADEPYVGQE  60
FESEAAAHAF YNAYATRVGF IIRVSKLSRS RRDGSAIGRA LVCNKEGFRM PDKREKIVRQ  120
RAETRVGCRA MILVRKVSSG KWVVTKFVKE HTHPLAPGKG RRDCIYDQYP NEHNKIRELT  180
QQLAIEKKRA ATYKRHLELI FEQIEEHNES LSKKIQHIVD RVREIESKEQ QSRV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.138760.0stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1098667630.0
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016674858.11e-174PREDICTED: protein FAR1-RELATED SEQUENCE 12-like isoform X4
TrEMBLA0A1U8IET51e-172A0A1U8IET5_GOSHI; protein FAR1-RELATED SEQUENCE 12-like isoform X4
STRINGGorai.005G126700.11e-171(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73022539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-102FAR1 family protein