PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A02G1301

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 219aa MW: 24929 Da PI: 8.6694

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A02G1301	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.8	1.3e-29	132	189	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgy+WrKYG+K++k++++pr+YY+C+s gC+vkk++er+ +d+++v++tYeg Hnhe Gh_A02G1301 132 DDGYKWRKYGKKSIKDNPNPRNYYKCSSVGCNVKKRIERDVKDQSYVVTTYEGVHNHE 189 8********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.4E-31	119	191	IPR003657	WRKY domain
SuperFamily	SSF118290	7.72E-27	124	191	IPR003657	WRKY domain
PROSITE profile	PS50811	30.63	126	191	IPR003657	WRKY domain
SMART	SM00774	4.8E-32	131	190	IPR003657	WRKY domain
Pfam	PF03106	1.9E-22	132	189	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MHNKLPSLQN SIKDQKSRFS LKMDFSHQNP NSNPNYTFFP ESVNPMPDFE VSDYLLLDGS 60 IFDDDTSSQS MLSSEKGMAA ATELSGATSK NCNMQVEFFF FCRKCKNGVG KNKSELGVRV 120 AFRMKSEMEV IDDGYKWRKY GKKSIKDNPN PRNYYKCSSV GCNVKKRIER DVKDQSYVVT 180 TYEGVHNHET PSMVYYNQMS IMAPNAWTFQ ASPPSSSST

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-25	121	192	7	78	Probable WRKY transcription factor 4
2lex_A	2e-25	121	192	7	78	Probable WRKY transcription factor 4
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.3139	1e-103	ovule

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	73860870	1e-103

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF669806	4e-69	KF669806.1 Gossypium hirsutum WRKY transcription factor 20 (WRKY20) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016742268.1	1e-153	PREDICTED: probable WRKY transcription factor 51
Swissprot	Q93WU9	1e-43	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	A0A1U8NW10	1e-152	A0A1U8NW10_GOSHI; probable WRKY transcription factor 51
STRING	Gorai.003G047800.1	1e-147	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5711	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	5e-46	WRKY DNA-binding protein 51

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]