PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A02G1382
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 340aa    MW: 37855.2 Da    PI: 6.4399
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A02G1382genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.64.8e-21158208256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                   y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  Gh_A02G1382 158 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRGE 208
                  59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.97E-34157217No hitNo description
PROSITE profilePS5103223.235158215IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-23158216IPR016177DNA-binding domain
SMARTSM003802.3E-38158221IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-32158216IPR001471AP2/ERF domain
PRINTSPR003673.2E-11159170IPR001471AP2/ERF domain
PfamPF008471.7E-14159208IPR001471AP2/ERF domain
PRINTSPR003673.2E-11181197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MAAVIDMYNS SRNSVFYDPL REELMKALEP FMKSASSSSS SSSSSSSPSQ PNLYPEYCSP  60
LNGSTHLFSN HGFSNYDKNM LGFEQTGSSL GLNELTPSQI LQIQSQILHQ QQQQQVASMA  120
AVATPPTTTF ENPRVGFLSP KPVPMKHVSS TPPKAAKLYR GVRQRHWGKW VAEIRLPKNR  180
TRLWLGTFDT AEEAALAYDK AAYKLRGEFA RLNFPHLKHQ GAHVFGEFGD YKPLHASVDA  240
KLQAICQSLQ AQGNPVKTKT LPKAAEFHYP IKTEEFDHKQ DNSSSSSSSS VDESSLAGSL  300
SSPESDITFF DFSDSKWEDN EIENFSLDKF PSLEIDWEAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-21157215160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.38460.0boll| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5271050.0HQ527105.1 Gossypium herbaceum clone NBRI_D2_459 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017615755.10.0PREDICTED: ethylene-responsive transcription factor ERF060
TrEMBLA0A2P5WFP70.0A0A2P5WFP7_GOSBA; Uncharacterized protein
STRINGGorai.003G038200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.14e-60ERF family protein