PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A02G1512
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 188aa    MW: 21698.2 Da    PI: 6.297
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A02G1512genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.6e-1980128355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr+++ +g+W+AeIr p     +   r++lg+fgtae Aa+a+++a+ k++g
  Gh_A02G1512  80 YRGVRRRP-WGKWAAEIRNP-----KlaVRVWLGTFGTAEAAARAYDRAAVKFRG 128
                  9*******.**********9.....557**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.9E-3779142IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-2179138IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.8E-3179137IPR001471AP2/ERF domain
PfamPF008473.0E-1379128IPR001471AP2/ERF domain
CDDcd000182.00E-2079138No hitNo description
PROSITE profilePS5103224.55379136IPR001471AP2/ERF domain
PRINTSPR003672.0E-118091IPR001471AP2/ERF domain
PRINTSPR003672.0E-11102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MENYNTPLPF TREKEYEIMV STLVHVINGT QPHTAVFDDN DRIHYFNPTC TPLRVNGCDV  60
FPRSQQQLPT VPAPTKERNY RGVRRRPWGK WAAEIRNPKL AVRVWLGTFG TAEAAARAYD  120
RAAVKFRGDK AKTNFPLSDY KTELQEVEEE KKSNEDKGRS SKENEDENGG EAWEIFSEGE  180
LRELMKMD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-2175137164ATERF1
3gcc_A9e-2175137164ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016719070.11e-140PREDICTED: ethylene-responsive transcription factor ERF109-like
TrEMBLA0A1U8LWW61e-139A0A1U8LWW6_GOSHI; ethylene-responsive transcription factor ERF109-like
TrEMBLA0A2P5Y1T31e-139A0A2P5Y1T3_GOSBA; Uncharacterized protein
STRINGGorai.003G023200.11e-117(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1834549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.14e-23ERF family protein