PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A02G1575
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 602aa    MW: 65994.9 Da    PI: 4.7238
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A02G1575genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS373.23.3e-1142356022374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                   ++Ll+cA+ +++++ e+a + La+l+e +s++gdp++R+a+yfteAL++rl++   ++ + l++ ets   s++ + ++k++++++P+ kf+hltaN
  Gh_A02G1575 235 LKALLDCAT-LADSEPERAIKSLAKLKESVSEHGDPTERVAFYFTEALHSRLSH---QTDQRLTMFETS---SEDFTLSYKALNDACPYSKFAHLTAN 325
                  689*****9.5667999999*********************************9...777777888887...89999********************* PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  qaIlea+++++++Hi+Df+i qG+QW+aLlqaLa+R+ ++p ++Ri g+ +p  g   + +l +tg+rL++fA+ l+++fef++ + + +++l+ +++
  Gh_A02G1575 326 QAILEATDRASKIHIVDFGIVQGVQWAALLQALATRSpGKPTRIRISGIPAPVLGstPAPSLYATGNRLRDFAKLLDLNFEFEP-ILTPVTELTGSSF 422
                  ************************************956666*********998888999************************.7999********* PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  rv+++E+laVn++lql++lld++ +  +   + L l ksl+Pk+v++ e ea++n+  Fl+rf +al+yysa+f+sle +lpr+s eri vE++llgr
  Gh_A02G1575 423 RVDEDEVLAVNFMLQLYNLLDSTPAAVE---TALALAKSLNPKIVTLGEYEASLNRVGFLNRFKNALRYYSAVFESLEPNLPRDSPERIQVEKHLLGR 517
                  ********************88888888...9****************************************************************** PP

         GRAS 293 eivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                  +i  v+  e+a  +rer+e +e+W+  +e +GF++v+ls++a +qak ll +++ s  y++ e++  ++ l W++ pL++vS+Wr
  Gh_A02G1575 518 KIAGVIGPEEAGtQRERMEDKEQWKILMEISGFETVTLSHYAISQAKILLWNYNySPSYSLIESQPGFLsLAWNEVPLLTVSSWR 602
                  *******99887699***************************************999***9999988888**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.362208580IPR005202Transcription factor GRAS
PfamPF035141.1E-111235602IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MAYMCADNGN LMAIAQQVIK QKQEQEQQQQ QQQQQQQQQQ LLGLNPFSLN PWSSTTHHGV  60
SSSGNVGYGL TGPGFTDPFQ GDAGEGFQFP NMEHHHSIGF RFPDFGGGAG GEFDSDEWMD  120
SLMNGGGHST DTSNLPSGCD AWQSNADFGI YGADPFSACP SRLTVTCSPP SNLNRVIPTT  180
TLPAWPPSPP PPPPQVTVEE TKTSSPQNQN QNPAINDGAG ISSGSPETDL SPPLLKALLD  240
CATLADSEPE RAIKSLAKLK ESVSEHGDPT ERVAFYFTEA LHSRLSHQTD QRLTMFETSS  300
EDFTLSYKAL NDACPYSKFA HLTANQAILE ATDRASKIHI VDFGIVQGVQ WAALLQALAT  360
RSPGKPTRIR ISGIPAPVLG STPAPSLYAT GNRLRDFAKL LDLNFEFEPI LTPVTELTGS  420
SFRVDEDEVL AVNFMLQLYN LLDSTPAAVE TALALAKSLN PKIVTLGEYE ASLNRVGFLN  480
RFKNALRYYS AVFESLEPNL PRDSPERIQV EKHLLGRKIA GVIGPEEAGT QRERMEDKEQ  540
WKILMEISGF ETVTLSHYAI SQAKILLWNY NYSPSYSLIE SQPGFLSLAW NEVPLLTVSS  600
WR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1502316021375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.210570.0boll| root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5255011e-111HQ525501.1 Gossypium herbaceum clone NBRI_D_EYT27PB02CZHKW simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614707.10.0PREDICTED: scarecrow-like protein 4
RefseqXP_017614714.10.0PREDICTED: scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A0D2QLT30.0A0A0D2QLT3_GOSRA; Uncharacterized protein
STRINGGorai.003G015400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47862752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein