PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A02G1694
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SBP
Protein Properties Length: 174aa    MW: 20291.7 Da    PI: 8.8748
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A02G1694genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP117.18.9e-3761137277
                  -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTS.SEEETTT--SS--S-STTTT-------S-- CS
          SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCs.rfhelsefDeekrsCrrrLakhnerrrkkq 77 
                  Cq+++C adl++ak+yhrrhkvCe h+k + vlv+g++qrfCqqCs rfhe+s+fD +krsCr+rLa+hn rrrk  
  Gh_A02G1694  61 CQADDCGADLKDAKQYHRRHKVCEPHAKDAFVLVKGIRQRFCQQCSsRFHEISKFDGTKRSCRDRLAGHNLRRRKVV 137
                  *********************************************55***************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114127.43658136IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.101.6E-2961123IPR004333Transcription factor, SBP-box
PfamPF031101.2E-2961135IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.28E-3261138IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MQMAKRACKT TVNWVDDEEE EEQREERMVK IRVVPRERYE RMNTFIHYSN SAAISGGGGG  60
CQADDCGADL KDAKQYHRRH KVCEPHAKDA FVLVKGIRQR FCQQCSSRFH EISKFDGTKR  120
SCRDRLAGHN LRRRKVVQSD QEVENDNNNN KNKASYGKGT DTPMLQQWYQ EFTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-2955135284squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.157261e-133ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6223200.0KJ622320.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469239.11e-111PREDICTED: squamosa promoter-binding-like protein 3
SwissprotQ6Z4611e-30SPL13_ORYSJ; Squamosa promoter-binding-like protein 13
TrEMBLA0A0D2REE11e-110A0A0D2REE1_GOSRA; Uncharacterized protein
STRINGGorai.003G003200.11e-111(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2206745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15270.15e-27squamosa promoter binding protein-like 5