PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A02G1819
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 116aa    MW: 12810.6 Da    PI: 10.4101
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A02G1819genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3322.2e-107663697
                 EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
           B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97
                  +++d++g  W +k   + ++g++ ++ GW +F + n++ +gD+++F++  +  +f  +++v+
  Gh_A02G1819  7 TVIKDPRGGMWLMKT--NVSRGQVRFGCGWFQFLHGNEIAAGDTLLFEHLPNtGNF-IHIQVI 66
                 4569***********..*******************************98763444.676666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.223169IPR003340B3 DNA binding domain
CDDcd100171.15E-8263No hitNo description
Gene3DG3DSA:2.40.330.104.8E-9663IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-10663IPR015300DNA-binding pseudobarrel domain
PfamPF023629.7E-8664IPR003340B3 DNA binding domain
PROSITE patternPS00354090100IPR000637HMG-I/HMG-Y, DNA-binding, conserved site
PfamPF021780.002992102IPR017956AT hook, DNA-binding motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MGKESITVIK DPRGGMWLMK TNVSRGQVRF GCGWFQFLHG NEIAAGDTLL FEHLPNTGNF  60
IHIQVINKGG NGNCGRLNKQ ANPCEDTSLA AKRPRGRPRK QIEEPPSTKY APSTAF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19199KRPRGRPRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017638207.13e-82PREDICTED: uncharacterized protein LOC108479878
TrEMBLA0A2P5W0G93e-81A0A2P5W0G9_GOSBA; Uncharacterized protein
STRINGGorai.003G020400.17e-40(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14995620