PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A03G0364

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 769aa MW: 86077.3 Da PI: 6.8162

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A03G0364	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	380	2.9e-116	396	766	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL+ cA+a++s+d+ a++l++++++++sp+gd qRla+yf+ AL+arla++++++y +l +++ s ++ l+a++++ v+P++k+ + a Gh_A03G0364 396 LRTLLILCAQAITSNDNVTAKELIKQIRQHSSPYGDGSQRLAHYFVDALEARLAGTGTQIYTSLVAKRMS---AADMLKAYQVYISVCPFVKVPIIFA 490 5789**********************************************************999998...9******************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N+ I +a+e+++++HiiDf+i +G++WpaL++ La+Rp+gpp+lRiTg++ p++g +e+++etg+rL k++e+ +vpfe+++ +a+++e++++e+L Gh_A03G0364 491 NNYISKAAEKATKLHIIDFGIFYGFHWPALIHCLANRPGGPPKLRITGIEFPHPGfrPAEAVQETGRRLVKYCERYNVPFEYHT-IAQKWETIRTEDL 587 *************************************************9999***********************.7******** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 +++++E++aVn+ + +llde+v l+s+rd+vLkl+++++P+v+v++ + ++n++ F++rf eal ++salfd+ e+++++e++ r+++E+++ gr Gh_A03G0364 588 KINSDEVIAVNCLCRFRNLLDETVVLNSPRDTVLKLIRKINPDVFVHSVVNGSYNAPFFVTRFREALFHFSALFDMCETNVSHEDNMRSMLEQKFYGR 685 ********************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ei+n+vaceg+er+er e++++W+ r ++aGF ++pl+ + +k +k ++ + ++v+ + ++++gWk+r +++ SaW Gh_A03G0364 686 EIMNIVACEGTERVERPESYKQWQVRNMRAGFVQLPLNPELMKRVKERVKARYHSDFMVDVDGRWMLQGWKGRIIYASSAW 766 **********************************************999777*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	67.125	370	747	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.0E-113	396	766	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 769 aa Download sequence Send to blast
MGSHLTGFPH TVNGFKISDG YLLPNPNVYP KFEISDGIGS NDQSLDFSSL GVPFLPSLGL 60 GDSSFASILS MGSMGKEGDT FSPTDDTDVS DTVLKYISQV LLEEEMEEKP CMFHDSLALQ 120 AAEKSLYEVL GESYPPRDQA PVCVDPSVES PDNCSFGTSS DHSIHSGSSS CTSYTIESQW 180 NGDFSENNNR PSLLQTSIPE NFVFQSTVDP GSRFSSHSQN GSANNGNGFM GCPASEFLVP 240 NYFSQSELAL HFKRGFEEAS KFLPKANQLN VGFKSNALIS ELKQKASNTV VKVESDRKEC 300 SPPRLMRKKS HEREDEDLEE RNNKQSAVLG DESELSDMFD KVLICARRRG QSSSSTADET 360 LPNGPSKTLL PNEQTNGSNS GKARGKKQGK KKVVDLRTLL ILCAQAITSN DNVTAKELIK 420 QIRQHSSPYG DGSQRLAHYF VDALEARLAG TGTQIYTSLV AKRMSAADML KAYQVYISVC 480 PFVKVPIIFA NNYISKAAEK ATKLHIIDFG IFYGFHWPAL IHCLANRPGG PPKLRITGIE 540 FPHPGFRPAE AVQETGRRLV KYCERYNVPF EYHTIAQKWE TIRTEDLKIN SDEVIAVNCL 600 CRFRNLLDET VVLNSPRDTV LKLIRKINPD VFVHSVVNGS YNAPFFVTRF REALFHFSAL 660 FDMCETNVSH EDNMRSMLEQ KFYGREIMNI VACEGTERVE RPESYKQWQV RNMRAGFVQL 720 PLNPELMKRV KERVKARYHS DFMVDVDGRW MLQGWKGRII YASSAWIPA

Sequence ? help Back to Top

Protein Sequence Length: 769 aa Download sequence Send to blast

MGSHLTGFPH TVNGFKISDG YLLPNPNVYP KFEISDGIGS NDQSLDFSSL GVPFLPSLGL  60
GDSSFASILS MGSMGKEGDT FSPTDDTDVS DTVLKYISQV LLEEEMEEKP CMFHDSLALQ  120
AAEKSLYEVL GESYPPRDQA PVCVDPSVES PDNCSFGTSS DHSIHSGSSS CTSYTIESQW  180
NGDFSENNNR PSLLQTSIPE NFVFQSTVDP GSRFSSHSQN GSANNGNGFM GCPASEFLVP  240
NYFSQSELAL HFKRGFEEAS KFLPKANQLN VGFKSNALIS ELKQKASNTV VKVESDRKEC  300
SPPRLMRKKS HEREDEDLEE RNNKQSAVLG DESELSDMFD KVLICARRRG QSSSSTADET  360
LPNGPSKTLL PNEQTNGSNS GKARGKKQGK KKVVDLRTLL ILCAQAITSN DNVTAKELIK  420
QIRQHSSPYG DGSQRLAHYF VDALEARLAG TGTQIYTSLV AKRMSAADML KAYQVYISVC  480
PFVKVPIIFA NNYISKAAEK ATKLHIIDFG IFYGFHWPAL IHCLANRPGG PPKLRITGIE  540
FPHPGFRPAE AVQETGRRLV KYCERYNVPF EYHTIAQKWE TIRTEDLKIN SDEVIAVNCL  600
CRFRNLLDET VVLNSPRDTV LKLIRKINPD VFVHSVVNGS YNAPFFVTRF REALFHFSAL  660
FDMCETNVSH EDNMRSMLEQ KFYGREIMNI VACEGTERVE RPESYKQWQV RNMRAGFVQL  720
PLNPELMKRV KERVKARYHS DFMVDVDGRW MLQGWKGRII YASSAWIPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-55	403	768	25	379	Protein SCARECROW
5b3h_D	2e-55	403	768	25	379	Protein SCARECROW
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.2768	0.0	boll\| ovule

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269\|PubMed:10341448, ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016665256.1	0.0	PREDICTED: scarecrow-like protein 33
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A1U8HGN8	0.0	A0A1U8HGN8_GOSHI; scarecrow-like protein 33
STRING	Gorai.003G130600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM358	27	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]