![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Gh_A03G0366 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
| Family | GRAS | ||||||||
| Protein Properties | Length: 639aa MW: 72540.5 Da PI: 6.3719 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 394.7 | 1e-120 | 266 | 635 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
+lL++cA+av+ +d++ a++lL+++s+++s +gd +qRla+yf+ AL++rla+++ y+ l +++ts ++ l+a+++++ ++P+ k+ h+ aN+
Gh_A03G0366 266 SLLTQCAQAVTINDQRTANELLKQISQNSSTTGDGTQRLAHYFADALKTRLAGMGAPSYSPLVSNRTS---AADILKAYRVLVLACPFKKMMHFYANK 360
79*********************************************************999988888...9************************** PP
GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
I++ +e+++++Hi+Df+i +G+QWp+L+q L++R++gpp+lRiTg++ p++g +e++eetg+rL++++e+++vpfe+nv +ak++e+++leeL++
Gh_A03G0366 361 KIMKVAEKATTLHIVDFGICYGFQWPCLIQRLSARAGGPPKLRITGIEFPQPGfrPAERVEETGRRLKRYCEKFKVPFEYNV-IAKKWETIQLEELKI 457
****************************************************9****************************9.7************** PP
GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
k++E+++Vn++++l++l+d+++s++s+rd vLkl++s++P+ +++ ++ +n++ F++rf eal ++sa+fd +ea++pr++ +r++ Ere++gr+i
Gh_A03G0366 458 KKDEVVIVNCMYRLKNLPDDTLSSTSARDIVLKLIRSINPEFFIHGISNGTYNAPFFVTRFREALFHFSAMFDIFEANVPRDDPQRMMFEREVIGRDI 555
************************************************************************************************** PP
GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
+nvvaceg er+er et+++W++r +aGFk++pl+++ +k++ +++ + + + ++ + ++++gWk+r ++++S+W+
Gh_A03G0366 556 MNVVACEGIERVERPETYKQWQARTLRAGFKQIPLDQDLVKKVTNMVQSNYHRDFIIDVDGRWMLQGWKGRVIFALSCWK 635
***************************************************999*************************8 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 66.646 | 238 | 615 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 3.5E-118 | 266 | 635 | IPR005202 | Transcription factor GRAS |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 639 aa Download sequence Send to blast |
MDTTLFQDFP SSMYAFKFDH GAVPVYSNHD FVNNNNGFIK DSPPQVVPSP DSPVESWTTT 60 NSEAHPLDNI PFANEMLKYI NEMLMEEDME EKTCMLQDCL ALQAAEKSFY EVLGHEYPLS 120 TDPIPAYTDQ TGGSPGDFDS SLIQTSLVDS LERTSLFPDL QRGIPPSIEP SGSSLLGSKG 180 RKNYERGDVD DLEQGRSNKQ SAVSLDDSEQ TDMFDDILLC KGENEDDPRC SLNESSQRVW 240 PQKGTSKGGT ARRKNGKKSE VVDLWSLLTQ CAQAVTINDQ RTANELLKQI SQNSSTTGDG 300 TQRLAHYFAD ALKTRLAGMG APSYSPLVSN RTSAADILKA YRVLVLACPF KKMMHFYANK 360 KIMKVAEKAT TLHIVDFGIC YGFQWPCLIQ RLSARAGGPP KLRITGIEFP QPGFRPAERV 420 EETGRRLKRY CEKFKVPFEY NVIAKKWETI QLEELKIKKD EVVIVNCMYR LKNLPDDTLS 480 STSARDIVLK LIRSINPEFF IHGISNGTYN APFFVTRFRE ALFHFSAMFD IFEANVPRDD 540 PQRMMFEREV IGRDIMNVVA CEGIERVERP ETYKQWQART LRAGFKQIPL DQDLVKKVTN 600 MVQSNYHRDF IIDVDGRWML QGWKGRVIFA LSCWKPVKN |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5hyz_A | 4e-53 | 268 | 635 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
| Search in ModeBase | ||||||
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Ghi.2718 | 0.0 | ovule | ||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. | |||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016665252.1 | 0.0 | PREDICTED: scarecrow-like protein 30 | ||||
| Swissprot | P0C883 | 0.0 | SCL33_ARATH; Scarecrow-like protein 33 | ||||
| TrEMBL | A0A1U8HGK2 | 0.0 | A0A1U8HGK2_GOSHI; scarecrow-like protein 30 | ||||
| STRING | Gorai.003G130400.1 | 0.0 | (Gossypium raimondii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM3646 | 25 | 61 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G59450.1 | 0.0 | GRAS family protein | ||||




