PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G0366
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 639aa    MW: 72540.5 Da    PI: 6.3719
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G0366genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS394.71e-1202666353374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  +lL++cA+av+ +d++ a++lL+++s+++s +gd +qRla+yf+ AL++rla+++   y+ l +++ts    ++ l+a+++++ ++P+ k+ h+ aN+
  Gh_A03G0366 266 SLLTQCAQAVTINDQRTANELLKQISQNSSTTGDGTQRLAHYFADALKTRLAGMGAPSYSPLVSNRTS---AADILKAYRVLVLACPFKKMMHFYANK 360
                  79*********************************************************999988888...9************************** PP

         GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                   I++ +e+++++Hi+Df+i +G+QWp+L+q L++R++gpp+lRiTg++ p++g   +e++eetg+rL++++e+++vpfe+nv +ak++e+++leeL++
  Gh_A03G0366 361 KIMKVAEKATTLHIVDFGICYGFQWPCLIQRLSARAGGPPKLRITGIEFPQPGfrPAERVEETGRRLKRYCEKFKVPFEYNV-IAKKWETIQLEELKI 457
                  ****************************************************9****************************9.7************** PP

         GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                  k++E+++Vn++++l++l+d+++s++s+rd vLkl++s++P+ +++  ++  +n++ F++rf eal ++sa+fd +ea++pr++ +r++ Ere++gr+i
  Gh_A03G0366 458 KKDEVVIVNCMYRLKNLPDDTLSSTSARDIVLKLIRSINPEFFIHGISNGTYNAPFFVTRFREALFHFSAMFDIFEANVPRDDPQRMMFEREVIGRDI 555
                  ************************************************************************************************** PP

         GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +nvvaceg er+er et+++W++r  +aGFk++pl+++ +k++  +++  + + + ++ +  ++++gWk+r ++++S+W+
  Gh_A03G0366 556 MNVVACEGIERVERPETYKQWQARTLRAGFKQIPLDQDLVKKVTNMVQSNYHRDFIIDVDGRWMLQGWKGRVIFALSCWK 635
                  ***************************************************999*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.646238615IPR005202Transcription factor GRAS
PfamPF035143.5E-118266635IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MDTTLFQDFP SSMYAFKFDH GAVPVYSNHD FVNNNNGFIK DSPPQVVPSP DSPVESWTTT  60
NSEAHPLDNI PFANEMLKYI NEMLMEEDME EKTCMLQDCL ALQAAEKSFY EVLGHEYPLS  120
TDPIPAYTDQ TGGSPGDFDS SLIQTSLVDS LERTSLFPDL QRGIPPSIEP SGSSLLGSKG  180
RKNYERGDVD DLEQGRSNKQ SAVSLDDSEQ TDMFDDILLC KGENEDDPRC SLNESSQRVW  240
PQKGTSKGGT ARRKNGKKSE VVDLWSLLTQ CAQAVTINDQ RTANELLKQI SQNSSTTGDG  300
TQRLAHYFAD ALKTRLAGMG APSYSPLVSN RTSAADILKA YRVLVLACPF KKMMHFYANK  360
KIMKVAEKAT TLHIVDFGIC YGFQWPCLIQ RLSARAGGPP KLRITGIEFP QPGFRPAERV  420
EETGRRLKRY CEKFKVPFEY NVIAKKWETI QLEELKIKKD EVVIVNCMYR LKNLPDDTLS  480
STSARDIVLK LIRSINPEFF IHGISNGTYN APFFVTRFRE ALFHFSAMFD IFEANVPRDD  540
PQRMMFEREV IGRDIMNVVA CEGIERVERP ETYKQWQART LRAGFKQIPL DQDLVKKVTN  600
MVQSNYHRDF IIDVDGRWML QGWKGRVIFA LSCWKPVKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-532686358375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.27180.0ovule
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016665252.10.0PREDICTED: scarecrow-like protein 30
SwissprotP0C8830.0SCL33_ARATH; Scarecrow-like protein 33
TrEMBLA0A1U8HGK20.0A0A1U8HGK2_GOSHI; scarecrow-like protein 30
STRINGGorai.003G130400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59450.10.0GRAS family protein