PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G0607
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 419aa    MW: 46264.6 Da    PI: 6.9524
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G0607genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.66.3e-15228273555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn  ErrRR+ri++++++L++l+P+a      K +Ka++L +++eY+k+Lq
  Gh_A03G0607 228 HNLSERRRRHRIKQKMNTLQKLVPNA-----SKTDKASMLDEVIEYLKQLQ 273
                  9************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-18221292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.212223272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-18228292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.30E-15228277No hitNo description
PfamPF000101.8E-12228273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-16229278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0016607Cellular Componentnuclear speck
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MSHCVVPNCW NLKHQSQEQV HFVEEEENEA NRSSHISNPM SNHEVAELTW QNGQLAFHGL  60
NRHLPTASSK PTWGISGDTL ESIVHQATCL HTQNHNFNLL QHDQNQTPVV VSSIAASSGS  120
SGRSPTAAVV KKRARSSSDV CGEIPRGGVG EEYASACASA NAAFCKENDD STMMTWASHL  180
SPQTMKAKAI DEDYAYQDGS ENQDEEQETR GETDRSQATR RSRASAIHNL SERRRRHRIK  240
QKMNTLQKLV PNASKTDKAS MLDEVIEYLK QLQTQVEMMS MRNMAAQMMM QQTRWQLQMS  300
ALARMGVGMG IGMLDDNNSL APNPSPVTAP THTFLPPPPP TFVTPPPMIP TRFAAAAQAN  360
SDASSHGSIP SPDPYCTFLA QSMNMELYNN KMAALYRPQI NQTTQTSSNP SRSNNVAKD
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO738476840.0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00571DAPTransfer from AT5G61270Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016665440.10.0PREDICTED: transcription factor PIF7-like
TrEMBLA0A1U8HHA60.0A0A1U8HHA6_GOSHI; transcription factor PIF7-like
STRINGGorai.003G099500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39192451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.19e-32bHLH family protein