PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G0634
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 231aa    MW: 27185.9 Da    PI: 9.1754
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G0634genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.35.5e-30959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienk+nrqvtfskRr g+lKKA+E+SvLCda+va+++fss+gkl+ey++
  Gh_A03G0634  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAQVALMVFSSKGKLFEYAT 59
                 79***********************************************86 PP
2K-box98.41.1e-328417410100
        K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  e +++ +++ e+akLk+++e+Lqr++Rh+ Ged+++Lsl+eLq+LeqqL+++lk+iRskKn+l++e+i+elqkk kelqe+n+ L kkl+e
  Gh_A03G0634  84 EIQQNGNWTWEHAKLKARMETLQRNLRHYEGEDIQNLSLRELQNLEQQLDSALKRIRSKKNQLMVESISELQKKDKELQEQNNILAKKLKE 174
                  567889**********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.0E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.226161IPR002100Transcription factor, MADS-box
CDDcd002659.18E-41274No hitNo description
SuperFamilySSF554553.92E-33291IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003198.8E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-313859IPR002100Transcription factor, MADS-box
PfamPF014862.1E-2683172IPR002487Transcription factor, K-box
PROSITE profilePS5129716.63688178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AQVALMVFSS KGKLFEYATE  60
SCMERILERY ERYSFTEIQC ATDEIQQNGN WTWEHAKLKA RMETLQRNLR HYEGEDIQNL  120
SLRELQNLEQ QLDSALKRIR SKKNQLMVES ISELQKKDKE LQEQNNILAK KLKEKEKTNV  180
EQAHWQLNNN CQDSSSMLLP LNISSNGREK EDNETTNSGV LLPWMIRHHL E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P5e-22174173Myocyte-specific enhancer factor 2B
1tqe_Q5e-22174173Myocyte-specific enhancer factor 2B
1tqe_R5e-22174173Myocyte-specific enhancer factor 2B
1tqe_S5e-22174173Myocyte-specific enhancer factor 2B
6c9l_A5e-22174173Myocyte-specific enhancer factor 2B
6c9l_B5e-22174173Myocyte-specific enhancer factor 2B
6c9l_C5e-22174173Myocyte-specific enhancer factor 2B
6c9l_D5e-22174173Myocyte-specific enhancer factor 2B
6c9l_E5e-22174173Myocyte-specific enhancer factor 2B
6c9l_F5e-22174173Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1556380.0KC155638.1 Gossypium hirsutum MADS box protein MADS43 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016666698.11e-169PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X1
SwissprotQ6E6S71e-100AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A1U8HRW11e-168A0A1U8HRW1_GOSHI; truncated transcription factor CAULIFLOWER A-like isoform X1
STRINGGorai.003G103000.11e-153(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79225110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.16e-95AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]