PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G0635
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Dof
Protein Properties Length: 300aa    MW: 32220 Da    PI: 9.8296
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G0635genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.72.5e-383494262
       zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                 +++alkcprCds ntkfCyynny lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s+
  Gh_A03G0635 34 NNQALKCPRCDSLNTKFCYYNNYDLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKAKRSK 94
                 6799*****************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-283492IPR003851Zinc finger, Dof-type
PfamPF027013.3E-333692IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.2733892IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104076IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MQDIHLIGGG RVFSGGGGGG GGDRRLGLQH QQQNNQALKC PRCDSLNTKF CYYNNYDLSQ  60
PRHFCKSCRR YWTKGGVLRN VPVGGGCRKA KRSKTKPSSE STTVAAAALA QPQSQQHLDQ  120
RKANSHSSSD SSSLIAANSK VAVTNKNNNN DSSTGGMAEA VSAVTSHSNN INVSESKLYG  180
NPNNLVFEAG LLEQRSESGI FPEIGSFTSL VTSSNNETSS FGFGTVLNGQ GQWRQQKMMS  240
VGGEEITGEL LDQTMQVELS NLHGRSESGF GPLIGKGVEI NRSLIFLMML TNRIGVKVKV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1816GGRVFSGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.131600.0ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818136e-32LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132566e-32LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016666697.10.0PREDICTED: dof zinc finger protein DOF5.4-like
TrEMBLA0A1U8HKW70.0A0A1U8HKW7_GOSHI; dof zinc finger protein DOF5.4-like
STRINGGorai.003G103100.11e-152(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44822656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60850.19e-45OBF binding protein 4