PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G0678
Common NameHSF14
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 343aa    MW: 38575.6 Da    PI: 8.1436
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G0678genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.26.3e-34251172103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sw e  ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF ++ Fkkg+k+ll++i+
   Gh_A03G0678  25 FLTKTYQLVDDPTTDKIVSWGEYDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFGNEFFKKGEKQLLCEIH 112
                   9*****************************************************************99.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r k++
   Gh_A03G0678 113 RGKTS 117
                   *9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.2E-3617109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-5621114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.76E-3222113IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.1E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.0E-3025113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MALVLDNCED ILLSLDSHKS VPAPFLTKTY QLVDDPTTDK IVSWGEYDTT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFGNEFF KKGEKQLLCE IHRGKTSQPQ  120
VAINHHYHSH SPFVNAPSFF PFPSRVSISP AASDEQANWC DSPILSSARV GTGVSVFGGY  180
NSSVTALSED NEKLRRRNNL LTSELAHMTK IYNDIIYFVQ NHVKHVTPSN PYPPNMLLCG  240
SQSAANSSLL QKPLNQFLGY YPNSTKPAQV QFLNTPTAAS KSSLTILEET SSNSCKTKLF  300
GVPLHSKKRL HPEYGATNSE TNKVRLVLEN EDLGLNLMPP STC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-222011716123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7486170.0KJ748617.1 Gossypium hirsutum HSF14 (HSF14) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313673.10.0heat stress transcription factor B-4-like
SwissprotQ9C6351e-107HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A075QMF20.0A0A075QMF2_GOSHI; HSF14
STRINGGorai.005G102000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29002866
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-109heat shock transcription factor B4