PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G0715
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SRS
Protein Properties Length: 194aa    MW: 22116.2 Da    PI: 5.6299
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G0715genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70261.53.1e-1980130262
       DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaassk 62 
                  r+g+++CqdCGnqakkdC+h          gf+C+thvkstWvpaakrre+q q+ +++++
  Gh_A03G0715  80 RQGGINCQDCGNQAKKDCSH----------GFQCQTHVKSTWVPAAKRREKQPQNPQQQQQ 130
                  7899**************76..........9********************9888776654 PP
2DUF70285.71.1e-2613419396154
       DUF702  96 skkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
                  +++ le +++P+ev+s+avfrcv+v+++d+ +e++laYqtav+igGhvfkGiLydqG+e+
  Gh_A03G0715 134 ENQGLELAQFPSEVNSPAVFRCVKVNAMDEvEEDQLAYQTAVNIGGHVFKGILYDQGPEN 193
                  456788899*********************99999***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.1E-1683131IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.0E-1285117IPR006510Zinc finger, lateral root primordium type 1
PfamPF051421.5E-22141192IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016244.0E-26142191IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MAGFFYLGGR QDEDKEENLN LYRNEEICNK GFEIWPHYNY YQQQQNVNNQ SFGAGPSRRT  60
SGLNLSDEWS SRSVGFTDMR QGGINCQDCG NQAKKDCSHG FQCQTHVKST WVPAAKRREK  120
QPQNPQQQQQ FRGENQGLEL AQFPSEVNSP AVFRCVKVNA MDEVEEDQLA YQTAVNIGGH  180
VFKGILYDQG PENH
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6160532e-49JX616053.1 Gossypium hirsutum clone NBRI_GE60429 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016666977.11e-145PREDICTED: protein SHI RELATED SEQUENCE 5-like
SwissprotQ9LQZ54e-52SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLA0A1U8HLP61e-143A0A1U8HLP6_GOSHI; protein SHI RELATED SEQUENCE 5-like
STRINGGorai.005G110600.11e-119(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26452572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19790.21e-41SHI-related sequence 7
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]