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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gh_A03G0992 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
BBR-BPC |
| Protein Properties |
Length: 280aa MW: 31414 Da PI: 9.8717 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_A03G0992 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 312.7 | 1.2e-95 | 1 | 280 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd..........maflqrdkalaernkalverdnkllal 84
md+d+ + rn+gyyep+ +k +lgl+l+ aerd+k+ r+ n l+ + +a+++rd m++ rd+++++ ++kl+++
Gh_A03G0992 1 MDEDALNMRNWGYYEPS--FKGHLGLHLL---AERDKKPfipaRDPNN-LMVTTNAFHPRDcivseappipMQY-VRDTWISQ--------REKLFNM 83
99**9999*******99..******9987...6999999999888888.999999*******************.9*******........7899999 PP
GAGA_bind 85 llvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkes 182
l+ + ++++++l++t+ ++s+ +p l ++a +++ + +e+++ +ke ++kkrq + +pk++kakk++k +k+++
Gh_A03G0992 84 LPPVT------APNYDILPDTSATHSMPI-WQPPLPPDAST---RDERVVGR-VEEPPASKEGVQSKKRQGGGDPKTPKAKKPRK----PKDNT---- 162
99666......47899*********9999.44545444443...33333444.45678888888889999**********99999....22222.... PP
GAGA_bind 183 aderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydls 280
++++k kks+d+++ng ++D+s++ +PvCsCtG+ +qCY+WG+GGWqSaCCtt++S+yPLP+stkrrgaRiagrKmSqgafkk+LekLaae yd+s
Gh_A03G0992 163 -NSSVKPAKKSMDIAINGYDMDISSISIPVCSCTGTAQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAENYDFS 259
.23578999***************************************************************************************** PP
GAGA_bind 281 npvDLkdhWAkHGtnkfvtir 301
np+DL++hWA+HGtnkfv ir
Gh_A03G0992 260 NPIDLRTHWARHGTNKFVIIR 280
*******************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 280 aa
Download sequence Send
to blast |
MDEDALNMRN WGYYEPSFKG HLGLHLLAER DKKPFIPARD PNNLMVTTNA FHPRDCIVSE 60
APPIPMQYVR DTWISQREKL FNMLPPVTAP NYDILPDTSA THSMPIWQPP LPPDASTRDE 120
RVVGRVEEPP ASKEGVQSKK RQGGGDPKTP KAKKPRKPKD NTNSSVKPAK KSMDIAINGY 180
DMDISSISIP VCSCTGTAQQ CYRWGCGGWQ SACCTTNVSM YPLPMSTKRR GARIAGRKMS 240
QGAFKKVLEK LAAENYDFSN PIDLRTHWAR HGTNKFVIIR
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Early detected in the floral meristem and floral organ primordia. At later stages, expressed in all floral organs and in particular in the ovule. {ECO:0000269|PubMed:15722463}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in leaf and sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JX964440 | 1e-107 | JX964440.1 Gossypium hirsutum clone NBRI_TRANS-709 microsatellite sequence. |
