PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G1333
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 256aa    MW: 29143.9 Da    PI: 9.5281
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G1333genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.32.2e-51151391128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  lppGfrFhPtdeelvv+yL++kv + +l++ ++i+evd++k++PwdLp      e+e yfFs+r+ ky++g+r+nrat sgyWkatg dk+++s  ++
  Gh_A03G1333  15 LPPGFRFHPTDEELVVQYLRRKVLAWPLPA-SIIPEVDVCKADPWDLPGD---LEQERYFFSTREAKYPNGNRSNRATFSGYWKATGIDKQIVSCrGN 108
                  79****************************.89***************54...46799**********************************987577 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  ++vg+kktLvfy+g+ p+g++tdW+mheyrl
  Gh_A03G1333 109 QVVGMKKTLVFYRGKPPQGTRTDWIMHEYRL 139
                  88***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.15E-6010172IPR003441NAC domain
PROSITE profilePS5100557.04615172IPR003441NAC domain
PfamPF023651.2E-2616139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MMEKLNFVNN GVLRLPPGFR FHPTDEELVV QYLRRKVLAW PLPASIIPEV DVCKADPWDL  60
PGDLEQERYF FSTREAKYPN GNRSNRATFS GYWKATGIDK QIVSCRGNQV VGMKKTLVFY  120
RGKPPQGTRT DWIMHEYRLV TADTCNAPHK KNQTQNHVVA VENWVLCRIF LTKRSGGATK  180
NEEDSLQSSN EKGVGKARRK SPVFYEFLSK ERTNLNLAPA SSSSCSSGIT QVSNNDTDDH  240
EESSSCNSFP YFRRKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-521317615169NO APICAL MERISTEM PROTEIN
1ut4_B4e-521317615169NO APICAL MERISTEM PROTEIN
1ut7_A4e-521317615169NO APICAL MERISTEM PROTEIN
1ut7_B4e-521317615169NO APICAL MERISTEM PROTEIN
3swm_A4e-521317618172NAC domain-containing protein 19
3swm_B4e-521317618172NAC domain-containing protein 19
3swm_C4e-521317618172NAC domain-containing protein 19
3swm_D4e-521317618172NAC domain-containing protein 19
3swp_A4e-521317618172NAC domain-containing protein 19
3swp_B4e-521317618172NAC domain-containing protein 19
3swp_C4e-521317618172NAC domain-containing protein 19
3swp_D4e-521317618172NAC domain-containing protein 19
4dul_A4e-521317615169NAC domain-containing protein 19
4dul_B4e-521317615169NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.35740.0boll| ovule
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}.
UniprotTISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1106420.0KC110642.1 Gossypium hirsutum NAC protein 7 (NAC7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016666241.10.0PREDICTED: NAC domain-containing protein 83-like
RefseqXP_017643855.10.0PREDICTED: NAC domain-containing protein 83-like
SwissprotQ9FY931e-98NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A0B0PL930.0A0A0B0PL93_GOSAR; Uncharacterized protein
TrEMBLA0A1U8HJL20.0A0A1U8HJL2_GOSHI; NAC domain-containing protein 83-like
STRINGGorai.005G195300.11e-173(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18062786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-100NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]