PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G1512
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 111aa    MW: 12531.8 Da    PI: 4.411
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G1512genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM37.29e-1224587128
          NAM  87 gkdkevlsk.kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                  g d++v+++ ++++vg+kk +vfy g + p g kt+W+m+eyrl
  Gh_A03G1512   2 GIDEPVVNSnSSKKVGMKKYFVFYIGeSGPAGIKTNWIMQEYRL 45 
                  56777777657889**********875889************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.487179IPR003441NAC domain
SuperFamilySSF1019411.57E-14278IPR003441NAC domain
PfamPF023652.3E-51445IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MGIDEPVVNS NSSKKVGMKK YFVFYIGESG PAGIKTNWIM QEYRLSDSDS SSSSRSSKRR  60
GGHSKIDYSK WVVCRVYERN CSEEEDDGTE LSCLDEVFLS LDDLDEISLP D
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ8018180.0KJ801818.1 Gossypium hirsutum NAC transcription factor (XND1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017633129.12e-74PREDICTED: NAC domain-containing protein 104-like
SwissprotQ8GWK62e-39NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A2P5W3T43e-73A0A2P5W3T4_GOSBA; Uncharacterized protein
STRINGGorai.005G217400.11e-73(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36742862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.12e-38xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]