PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G1559
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 379aa    MW: 42649.2 Da    PI: 9.2731
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G1559genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.0004339358120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  ++C++C+ ++ r+++L++H+
  Gh_A03G1559 339 FRCTICNITCGRSEDLNSHL 358
                  89*****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031341.4E-211184IPR004345TB2/DP1/HVA22-related protein
SuperFamilySSF576671.27E-10185232No hitNo description
SMARTSM004514.8E-4199233IPR003604Zinc finger, U1-type
SMARTSM003550.31202226IPR015880Zinc finger, C2H2-like
PfamPF128741.4E-9202226No hitNo description
SuperFamilySSF576672.88E-8327370No hitNo description
SMARTSM004515.9E-4336370IPR003604Zinc finger, U1-type
SMARTSM003555.5339363IPR015880Zinc finger, C2H2-like
PfamPF128742.2E-4339363No hitNo description
PROSITE patternPS000280341363IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MMLCLPINRR ASIQAIEANS NTDTKKLVTY WIIFSLISLF EHAFMGILQW LPFWPYMKLT  60
IVCWMMIPHF DGAFYVYNRF VHPCLYMDLP TIINWFKKQQ DLFLKDNFLV EVADDCVKAH  120
GPTEVQEKLI ANEPKGTETS ILQKGIKPVQ ITEKWEVAPI PKTDPNVIQT VNNTTATLPE  180
TVGEVGPDLP EIPSDKQVQK EWTCAMCQVT TTSEKTLNSH LRGRKHKDNL MQANNQPCKG  240
KAGLASKVKQ SEVSRKEPQK KGSKKQEPPK GQISASSAAC SNAVNPKTEM SKSNLPQEES  300
KKAIPTTNMV GNHVKSSENV QGQQQQVGKK HDKTKIPQFR CTICNITCGR SEDLNSHLWG  360
RKHLANIQKL NNLGEGQLA
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO722792131e-162
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016666610.10.0PREDICTED: uncharacterized protein LOC107886998
TrEMBLA0A1U8HKM70.0A0A1U8HKM7_GOSHI; HVA22-like protein
STRINGGorai.005G226700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2060334