PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G1661
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 129aa    MW: 14962.5 Da    PI: 7.2599
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G1661genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.13.7e-1473119555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h   Er RR+++++ f++L  llP++     +K +K++i+ +Av+YIk Lq
  Gh_A03G1661  73 HIWTERERRKKMRNMFSNLHALLPHL----PPKADKSTIVDEAVNYIKTLQ 119
                  6667*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-1666127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.06268118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-1572127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-1173119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.41E-1173123No hitNo description
SMARTSM003535.6E-976124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MSEEGRHESF LLWEKNHQSR PLSISDNNNN SPGLGSEDKS ATHNNNQQQE DNSQAETKKK  60
KKGSESDDEH DMHIWTERER RKKMRNMFSN LHALLPHLPP KADKSTIVDE AVNYIKTLQQ  120
TLQNLEKKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022763397.18e-46transcription factor bHLH95-like
TrEMBLA0A2P5XAN07e-73A0A2P5XAN0_GOSBA; Uncharacterized protein
STRINGEOX982837e-36(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50742549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-20bHLH family protein