PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G1673
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 406aa    MW: 46411.1 Da    PI: 5.7167
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G1673genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.16.8e-1846134298
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   k++++s+v+   +l l  +f++ h+   ++++t++ledesg++++  +i     +r+ l++GWk F  +++L egD++vF+l+g+s+f  +v ++r
  Gh_A03G1673  46 MKTMVRSNVTYGFWLHLLMPFCKLHMP--KQDTTIILEDESGEEYKASYIA----QRTALSAGWKAFSADHKLVEGDVLVFHLVGSSKF--KVYIVR 134
                  699*******************99974..4889****************43....3456**************************9999..777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-2041134IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.92E-2141134IPR015300DNA-binding pseudobarrel domain
CDDcd100177.99E-2343134No hitNo description
PROSITE profilePS5086312.06945136IPR003340B3 DNA binding domain
SMARTSM010195.0E-1845139IPR003340B3 DNA binding domain
PfamPF023622.0E-1546134IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MGTKIDEPQI PEMSLDPPEI TNPQPNVMEQ VEEIQANLAG RFPSCMKTMV RSNVTYGFWL  60
HLLMPFCKLH MPKQDTTIIL EDESGEEYKA SYIAQRTALS AGWKAFSADH KLVEGDVLVF  120
HLVGSSKFKV YIVRAFKSSE VDQCFRSLEV DIQAKPIRSI RMKRTKRPSK KAKCLELLPL  180
DPSDDNVENK SLMVLDTNSE HLTDRYDNDN KDPSSGLDDG IKSLASVIDF KEIKSIDNFI  240
IIVNGSRIDS ELSQYHRTKY YELCCSQNSF LHDNLLESIS SKLAAEIITQ IINMAEAIRA  300
CKISTSQADY TLWDKTLKGF ELLGMNVGFL RAKLNRLNTL SLELQQGVDT ERSKEQDHMK  360
EEKKSLERKL VKLKEAMHKL DTEIETLKEN AEKYELIFRE EVTAAW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016714517.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBLA0A1U8LIU10.0A0A1U8LIU1_GOSHI; B3 domain-containing protein Os01g0234100-like
STRINGGorai.005G238600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM167171012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.14e-36B3 family protein