PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A03G1697

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 116aa MW: 13423.7 Da PI: 10.698

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A03G1697	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.4	4.8e-17	7	102	3	97
EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 k+ltp dv rl++p ++eh +g+ +s + +++d+ +++W+++l+ +++ + vltkGW++Fvk gLk+gD v+F ++g+++ +l ++ Gh_A03G1697 7 KILTPTDVRV--RLSFPTATTREHfkllEGS--QSLDFQVRDSYSKVWTFRLCTgKNGHLKPVLTKGWRDFVKRMGLKVGDKVIFVVHGNHNDQLGIQ 100 6676666664..59*********977555..78899**********6644444459**********************999877666666 PP EE CS B3 96 vf 97 v Gh_A03G1697 101 VK 102 65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.2E-21	3	102	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.81E-16	4	87	No hit	No description
SuperFamily	SSF101936	1.31E-18	5	103	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	3.7E-7	5	103	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.4E-14	7	102	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.306	42	105	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 116 aa Download sequence Send to blast
MKELCSKILT PTDVRVRLSF PTATTREHFK LLEGSQSLDF QVRDSYSKVW TFRLCTGKNG 60 HLKPVLTKGW RDFVKRMGLK VGDKVIFVVH GNHNDQLGIQ VKRNIKLLGN EHWAYL

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	109884040	1e-162

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012481135.1	3e-65	PREDICTED: B3 domain-containing protein Os02g0764100-like
TrEMBL	A0A2P5Y966	3e-79	A0A2P5Y966_GOSBA; Uncharacterized protein
STRING	Gorai.005G241300.1	2e-64	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17815	4	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13260.1	6e-09	related to ABI3/VP1 1