PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G1950
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 400aa    MW: 42704.9 Da    PI: 6.5945
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G1950genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1673.2e-21300362163
                  XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                  e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++ N  L++e++++k e+++l +e+
  Gh_A03G1950 300 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLKEDNANLRSEANRIKSEYEQLLAEN 362
                  89*********************************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.4E-25494IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.1E-49133267No hitNo description
Gene3DG3DSA:1.20.5.1705.5E-16293358No hitNo description
SMARTSM003386.4E-20300364IPR004827Basic-leucine zipper domain
PfamPF001701.2E-19300362IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.737302365IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.88E-10303359No hitNo description
CDDcd147021.21E-23305355No hitNo description
PROSITE patternPS000360307322IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MDKTAQEKEP KTLPASSSQE PSSTTNSAGP ANADWSGFQQ AYSPIPPHGF LASTPQAPPY  60
MWGVQHIMPP YGTPPHPYVA MYPHGGIYAH PSIPPGSYPF SPFAMPSPNG IVEASGNTPG  120
NMEADGKPSD VKEKLPIKRS KGSLGSLNMI TGKNNNLGKE SGASANGAYS RSAESGSEGT  180
SEGSDENSHN DSHLKSGGRL DSGEGEASQN GNSAHGPQNG GPNTMVNTGL PIVPISTAVA  240
TTAVPGPTTN LHIGMDYWGS PASSTIPAMR GKVPPTPVAG GIVTPASRDS VQSQIWLQDE  300
RELKRQRRKQ SNRESARRSR LRKQAECDEL AQRAEVLKED NANLRSEANR IKSEYEQLLA  360
ENTSLKERLK EIPGHEDLNS SRNDQDTNND KQTEHVQGSQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1316322RRSRLRK
2316323RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.216110.0boll
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017607701.10.0PREDICTED: bZIP transcription factor 16-like isoform X1
SwissprotQ501B21e-166BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A0D2RPY60.0A0A0D2RPY6_GOSRA; Uncharacterized protein
STRINGGorai.003G185700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37012557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-147basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]