PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A03G2016

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 176aa MW: 18968.2 Da PI: 4.8184

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A03G2016	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51.8	2e-16	12	59	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r ++ +g+Wv+eIr+p++ ++r++lg++ t+e+Aa+a++ a+++l+g Gh_A03G2016 12 YRGIR-CR-SGKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDVAALALKG 59 9*9.55.6*****843...5**********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	6.1E-27	11	69	IPR001471	AP2/ERF domain
SMART	SM00380	3.2E-28	11	73	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	20.02	11	67	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.63E-18	11	69	IPR016177	DNA-binding domain
PRINTS	PR00367	7.9E-7	12	23	IPR001471	AP2/ERF domain
Pfam	PF00847	5.9E-10	12	59	IPR001471	AP2/ERF domain
CDD	cd00018	1.12E-17	12	69	No hit	No description
PRINTS	PR00367	7.9E-7	49	69	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MASSSSSKHP MYRGIRCRSG KWVSEIREPR KTTRIWLGTY PTPEMAAAAY DVAALALKGS 60 EAVVNFPDSV ASYPIPASMS SADIRKAAAA AAAVQRGENK SSESSNLVGT VQHHVVKDEG 120 FTTGEYVDED VFLNMPNLLV DMAKGLLVSP PRISLIPSDD DDDSPDNCNG ESLWSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-13	6	67	9	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP259810	0.0	KP259810.1 Gossypium barbadense APETALA2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017647301.1	1e-127	PREDICTED: ethylene-responsive transcription factor ERF027-like
Swissprot	Q9CAN9	1e-49	ERF26_ARATH; Ethylene-responsive transcription factor ERF026
Swissprot	Q9FJ90	9e-50	ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBL	A0A0F6SA15	3e-97	A0A0F6SA15_GOSBA; APETALA2
TrEMBL	A0A1U8LN91	3e-97	A0A1U8LN91_GOSHI; ethylene-responsive transcription factor ERF027-like
STRING	Gorai.003G162600.1	3e-95	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1957	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52020.1	8e-38	ERF family protein

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]