PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A03G2095

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 360aa MW: 38576.5 Da PI: 10.2407

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A03G2095	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	21.7	4.6e-07	327	347	5	25
CHHHCHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKk 25 +r+rr++kNRe+A rsR+RK+ Gh_A03G2095 327 RRQRRMIKNRESAARSRARKQ 347 79******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd14707	1.35E-13	327	350	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.7E-5	327	349	No hit	No description
PROSITE pattern	PS00036	0	330	345	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MAANMKLKNF GSNQPLPADG GGNTLLSRQP SIYSLTFDEF QSSMGGIGKY FGSMNMDELL 60 KNIWSAEETQ TMASYSGGLD AYGGLQRQGS LTLPRTLSQK TVDEVWKDIS KEYSIGKDGI 120 GTAAGTNHVP QRQQTLGEMT LEEFLVKAGV VREGTQFAGK DNNVNGGFFD GFQQGGRTPN 180 FMGNRLSEVG FQASNLPLNV NGVKSNQHQL PQHLQQQPIF PRQPAVGFGF QMPLQSGGQL 240 GSPGNRGGIT GMGDQGPPNG LIQGGKMGMI GLGGPVSVAT GSPANHFSSD GIGKSSADTS 300 SVSPVPYVFN GSSRGWKCSA VEKVAERRQR RMIKNRESAA RSRARKQVTI CLIYFILVKR

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MAANMKLKNF GSNQPLPADG GGNTLLSRQP SIYSLTFDEF QSSMGGIGKY FGSMNMDELL  60
KNIWSAEETQ TMASYSGGLD AYGGLQRQGS LTLPRTLSQK TVDEVWKDIS KEYSIGKDGI  120
GTAAGTNHVP QRQQTLGEMT LEEFLVKAGV VREGTQFAGK DNNVNGGFFD GFQQGGRTPN  180
FMGNRLSEVG FQASNLPLNV NGVKSNQHQL PQHLQQQPIF PRQPAVGFGF QMPLQSGGQL  240
GSPGNRGGIT GMGDQGPPNG LIQGGKMGMI GLGGPVSVAT GSPANHFSSD GIGKSSADTS  300
SVSPVPYVFN GSSRGWKCSA VEKVAERRQR RMIKNRESAA RSRARKQVTI CLIYFILVKR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, leaves, flowers and siliques but not in seeds. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016742898.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5
Swissprot	Q9M7Q4	5e-94	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	A0A1U8NXW7	0.0	A0A1U8NXW7_GOSHI; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	A0A2P5Y3L3	0.0	A0A2P5Y3L3_GOSBA; Uncharacterized protein
STRING	Gorai.005G102300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM734	27	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.2	7e-89	abscisic acid responsive elements-binding factor 2

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]