 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Gh_A04G0081 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
GRAS |
| Protein Properties |
Length: 508aa MW: 56689.9 Da PI: 6.4504 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_A04G0081 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 441.1 | 8e-135 | 137 | 507 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98
l+elL +cA+a++++d++l++ l+++l++++s +g+p qRl ay++e+L arla+s+s++yk+l+++e + sse l+++++++e++P++kf+++ a
Gh_A04G0081 137 LKELLCACAKAIENKDMHLTDCLMTQLRQMVSVSGEPKQRLGAYMLEGLVARLASSGSSIYKSLRCKEPA---SSELLSYMHILYEICPYFKFGYMSA 231
5799*****************************************************************9...9************************ PP
GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
N aI+ea++ e+rvHiiDf+i qG QW++L++aLa++p+gpps+RiTg+++++s + le +++rL+k+Ae ++vpfef++ +a + +d++le+L
Gh_A04G0081 232 NGAIVEAMKDESRVHIIDFQIAQGSQWLTLIHALAAQPGGPPSIRITGIDDSTSAyaRGGGLEIVRQRLSKVAELCKVPFEFHA-AAISATDVQLENL 328
***************************************************998899999************************.8999********* PP
GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
r++pgEa+aVn++++lh+++desv ++++rd++L+l kslsPkvv++veqea++n+++F+ rfle+++++ +f+s++++lpr+++eri+vE+++l+r
Gh_A04G0081 329 RIQPGEAIAVNFAMMLHHMPDESVGTQNHRDRLLRLAKSLSPKVVTLVEQEANTNTAPFVPRFLETMNHFLPIFESIDVSLPRDHKERINVEQHCLAR 426
************************************************************************************************** PP
GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
eivn++aceg er+erhe l+kWr+r+ +aGFkp pls+++++++k+ll+ + + y++e+++g l+lgW++r++v+ +aWr
Gh_A04G0081 427 EIVNIIACEGPERVERHELLGKWRSRFIMAGFKPFPLSSFVNSTIKTLLQSYCD-KYTLEDKDGVLFLGWMNRAIVASCAWR 507
*****************************************************5.5*************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 508 aa
Download sequence Send
to blast |
MQTFQKGKVT VQEMEPNCWP PNLEQYCTLD SSSGLQNSSS TASFSPNGSP VSQPNNSCPM 60
DLRRSPDNTC SPVSDSCVTD NEHDLSHMIR QLETAMLGTD SDNIDVHAIT ASGRSTEVSI 120
KSERWKYMME MIARGDLKEL LCACAKAIEN KDMHLTDCLM TQLRQMVSVS GEPKQRLGAY 180
MLEGLVARLA SSGSSIYKSL RCKEPASSEL LSYMHILYEI CPYFKFGYMS ANGAIVEAMK 240
DESRVHIIDF QIAQGSQWLT LIHALAAQPG GPPSIRITGI DDSTSAYARG GGLEIVRQRL 300
SKVAELCKVP FEFHAAAISA TDVQLENLRI QPGEAIAVNF AMMLHHMPDE SVGTQNHRDR 360
LLRLAKSLSP KVVTLVEQEA NTNTAPFVPR FLETMNHFLP IFESIDVSLP RDHKERINVE 420
QHCLAREIVN IIACEGPERV ERHELLGKWR SRFIMAGFKP FPLSSFVNST IKTLLQSYCD 480
KYTLEDKDGV LFLGWMNRAI VASCAWRC
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
