PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A04G0351

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

YABBY

Protein Properties

Length: 183aa MW: 20752.7 Da PI: 8.7595

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A04G0351	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	183.7	9.9e-57	7	160	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekls 102 s++eq+Cy+ Cn Cn ilav+vP ++lf++vtvrCG Ct+l s+n+a + q +a ++ ++ + e + ++l s +k +++ ++++ ++ Gh_A04G0351 7 SAPEQLCYIPCNLCNIILAVNVPCSCLFETVTVRCGQCTNLCSINMAASFQSRAGKEI---QVPDYTSSEYR---MELGSSSSKGKNKLPKRPTI-MN 97 789****************************************9999998888774...33333333333...34444444555555555553.34 PP YABBY 103 enedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + ++e v v+rPP+kr r+Ps yn+fikeeiqrik +nPdishreafs+aaknWa fP+ihfgl Gh_A04G0351 98 TTTQERV-----VNRPPDKRHRAPSLYNQFIKEEIQRIKLNNPDISHREAFSTAAKNWARFPHIHFGL 160 4444333.....69**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.6E-63	8	160	IPR006780	YABBY protein
SuperFamily	SSF47095	8.64E-7	98	153	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MSSFNNSAPE QLCYIPCNLC NIILAVNVPC SCLFETVTVR CGQCTNLCSI NMAASFQSRA 60 GKEIQVPDYT SSEYRMELGS SSSKGKNKLP KRPTIMNTTT QERVVNRPPD KRHRAPSLYN 120 QFIKEEIQRI KLNNPDISHR EAFSTAAKNW ARFPHIHFGL MLETGTQPKL NDDSTEHFQQ 180 LLK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.21659	0.0	boll

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ526781	3e-63	HQ526781.1 Gossypium herbaceum clone NBRI_A_1939 simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016738941.1	1e-136	PREDICTED: axial regulator YABBY 5-like isoform X2
Refseq	XP_016738942.1	1e-137	PREDICTED: axial regulator YABBY 5-like isoform X3
Refseq	XP_016738943.1	1e-137	PREDICTED: axial regulator YABBY 5-like isoform X3
Refseq	XP_016738944.1	1e-137	PREDICTED: axial regulator YABBY 5-like isoform X3
Refseq	XP_016738945.1	1e-137	PREDICTED: axial regulator YABBY 5-like isoform X3
Swissprot	Q8GW46	8e-75	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A1U8NIS0	1e-135	A0A1U8NIS0_GOSHI; axial regulator YABBY 5-like isoform X2
TrEMBL	A0A1U8NM12	1e-135	A0A1U8NM12_GOSHI; axial regulator YABBY 5-like isoform X3
STRING	Gorai.009G367100.1	1e-132	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5538	26	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	4e-74	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]