PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A04G0422
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 203aa    MW: 23612 Da    PI: 9.2629
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A04G0422genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.59.3e-52111351128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                  lp GfrFhP+deelv++yL +kv+ ++  +++ + evd++k+ePwd+p++++ ++kewyf+s+rd+kyatg r+nrat+sgyWkatgkdk+v+s kg+
  Gh_A04G0422  11 LPTGFRFHPRDEELVCDYLMRKVALTD--TFQLMIEVDLNKCEPWDIPETARVNSKEWYFYSQRDRKYATGLRTNRATTSGYWKATGKDKAVHS-KGT 105
                  799********************9988..346799*************88888999**************************************.999 PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                   vg++ktLvfy+grap+g+k+dWvmhe+rl
  Gh_A04G0422 106 IVGMRKTLVFYHGRAPSGTKSDWVMHEFRL 135
                  ****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.1E-573156IPR003441NAC domain
PROSITE profilePS5100554.39911156IPR003441NAC domain
PfamPF023655.9E-2712135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MSNIRLVEAK LPTGFRFHPR DEELVCDYLM RKVALTDTFQ LMIEVDLNKC EPWDIPETAR  60
VNSKEWYFYS QRDRKYATGL RTNRATTSGY WKATGKDKAV HSKGTIVGMR KTLVFYHGRA  120
PSGTKSDWVM HEFRLQPTFS VSTFKEDWVL CRMLHKTKEI GKKPSSMESS YDDIGSSPLP  180
PLMDSLISFH QPNLDYKYEQ QVP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-53615612165NO APICAL MERISTEM PROTEIN
1ut4_B6e-53615612165NO APICAL MERISTEM PROTEIN
1ut7_A6e-53615612165NO APICAL MERISTEM PROTEIN
1ut7_B6e-53615612165NO APICAL MERISTEM PROTEIN
3swm_A6e-53615615168NAC domain-containing protein 19
3swm_B6e-53615615168NAC domain-containing protein 19
3swm_C6e-53615615168NAC domain-containing protein 19
3swm_D6e-53615615168NAC domain-containing protein 19
3swp_A6e-53615615168NAC domain-containing protein 19
3swp_B6e-53615615168NAC domain-containing protein 19
3swp_C6e-53615615168NAC domain-containing protein 19
3swp_D6e-53615615168NAC domain-containing protein 19
4dul_A6e-53615612165NAC domain-containing protein 19
4dul_B6e-53615612165NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016738537.11e-153PREDICTED: NAC domain-containing protein 21/22 isoform X1
SwissprotQ84TE63e-86NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A1U8NHG11e-152A0A1U8NHG1_GOSHI; NAC domain-containing protein 21/22 isoform X1
STRINGGorai.009G354900.11e-142(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36192859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.21e-88NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]