PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A04G0462

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YA

Protein Properties

Length: 175aa MW: 19410.1 Da PI: 10.7185

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A04G0462	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	84.6	1.6e-26	59	115	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNa+Qy++I++RR Rak++ e+k+ +k+rkpylh SRh hA+r pRg+gG F Gh_A04G0462 59 DGPIYVNARQYNGIIRRRRYRAKAALETKV-TKARKPYLHYSRHLHAVRHPRGNGGLF 115 57**************************.***********************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	5.8E-28	57	118	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	30.508	58	118	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.3E-18	61	83	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.3E-22	61	115	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.3E-18	92	115	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MLKAIISRQQ SLQSEHGLGQ PMVCAKYPYL MDQGYGVFPT FGPQFSGRVM LPLNLATEDG 60 PIYVNARQYN GIIRRRRYRA KAALETKVTK ARKPYLHYSR HLHAVRHPRG NGGLFLNTKS 120 SNTGKDGMQM MKANEGQLSR LTGSQISQVL QSDSGTINSY KEPNGGGSTF SGSER

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-14	59	123	2	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016700003.1	1e-127	PREDICTED: nuclear transcription factor Y subunit A-10-like
Refseq	XP_016702219.1	1e-127	PREDICTED: nuclear transcription factor Y subunit A-10-like
Swissprot	Q8LFU0	4e-40	NFYAA_ARATH; Nuclear transcription factor Y subunit A-10
TrEMBL	A0A1U8KNC4	1e-126	A0A1U8KNC4_GOSHI; nuclear transcription factor Y subunit A-10-like
TrEMBL	A0A2P5WAM1	1e-122	A0A2P5WAM1_GOSBA; Uncharacterized protein
STRING	Gorai.009G394400.1	1e-102	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3008	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.3	5e-37	nuclear factor Y, subunit A10

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Zhang M,Hu X,Zhu M,Xu M,Wang L Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis. Sci Rep, 2017. 7(1): p. 1395 [PMID:28469131]