PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A04G0481

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 257aa MW: 29299.9 Da PI: 7.5329

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A04G0481	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	135.5	3.5e-42	5	138	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +pGfrF Pt+eelv++yL++k+e ++ +++vi+ v+iy+++PwdLp+ ++++ ++w+fF++r++++a+g +++r t++gyWkatg+ Gh_A04G0481 5 APGFRFYPTEEELVSFYLHHKLEMERedlnRLMDRVIPIVNIYEFNPWDLPQfsvyLCHKDPEQWFFFIPRQESEARGGKPKRRTTTGYWKATGSPGF 102 69******************99995653223347***********556653445667****************9********** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyr 127 v++++++ +g+k+t+vfykgrap+g kt+W m+ey+ Gh_A04G0481 103 VYCSGNRPIGVKRTMVFYKGRAPNGIKTEWKMNEYK 138 *********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	46.387	4	165	IPR003441	NAC domain
SuperFamily	SSF101941	7.45E-45	4	165	IPR003441	NAC domain
Pfam	PF02365	2.2E-21	6	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MEDIAPGFRF YPTEEELVSF YLHHKLEMER EDLNRLMDRV IPIVNIYEFN PWDLPQFSVY 60 LCHKDPEQWF FFIPRQESEA RGGKPKRRTT TGYWKATGSP GFVYCSGNRP IGVKRTMVFY 120 KGRAPNGIKT EWKMNEYKAI EQGASSISAT PTLRHEFSLC RVYKKSKCLR SFDRRPPVGG 180 VQIIKPNAAA HQCEATAGEA ASGYHKSQQM AGSPESSSSE DHGNPSQTGA SNDSSATVFN 240 YDELFWNLDG FWESQIL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-32	4	165	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-32	4	165	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-32	4	165	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-32	4	165	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-32	4	165	20	168	NAC domain-containing protein 19
3swm_B	1e-32	4	165	20	168	NAC domain-containing protein 19
3swm_C	1e-32	4	165	20	168	NAC domain-containing protein 19
3swm_D	1e-32	4	165	20	168	NAC domain-containing protein 19
3swp_A	1e-32	4	165	20	168	NAC domain-containing protein 19
3swp_B	1e-32	4	165	20	168	NAC domain-containing protein 19
3swp_C	1e-32	4	165	20	168	NAC domain-containing protein 19
3swp_D	1e-32	4	165	20	168	NAC domain-containing protein 19
4dul_A	1e-32	4	165	17	165	NAC domain-containing protein 19
4dul_B	1e-32	4	165	17	165	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016739503.1	0.0	PREDICTED: NAC domain-containing protein 90-like isoform X1
Swissprot	Q9FMR3	1e-66	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A1U8NN67	0.0	A0A1U8NN67_GOSHI; NAC domain-containing protein 90-like isoform X1
STRING	Gorai.009G399900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10159	10	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	4e-69	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]