PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A04G0489

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TCP

Protein Properties

Length: 405aa MW: 45194.3 Da PI: 6.8837

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A04G0489	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	63	1.1e-19	40	95	3	58
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpa 58 ++++ + ++h kv+gRdRR+R++++c +F L++e G+ ++++ti+WLlqq p Gh_A04G0489 40 KRRRYKGDRHIKVEGRDRRIRIPLTCCSGLFRLTREMGHRTNGETIQWLLQQTRPD 95 4666788*********************************************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	15.527	45	99	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.1E-16	45	94	IPR005333	Transcription factor, TCP
SuperFamily	SSF56317	4.84E-34	120	376	IPR003010	Carbon-nitrogen hydrolase
Gene3D	G3DSA:3.60.110.10	1.6E-32	120	371	IPR003010	Carbon-nitrogen hydrolase
PROSITE profile	PS50263	16.379	121	405	IPR003010	Carbon-nitrogen hydrolase
Pfam	PF00795	8.8E-25	122	368	IPR003010	Carbon-nitrogen hydrolase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0016810	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MDSQTQSVDQ QQQEEENEQR PFLPENAEEG GPTSLQQSKK RRRYKGDRHI KVEGRDRRIR 60 IPLTCCSGLF RLTREMGHRT NGETIQWLLQ QTRPDLVPPD PVTHPTLLFA SAPAYMEKGR 120 VRATVVQAST VFFDTPATLD KAESLVAGSA AYGSQGCPFE SPNEDNQQLP KYHASAIEVA 180 GPGVDRLVKS SCRYKVHLVM GVVEKDGFYL FSTILFFDLV GQYLGKHRKI MRSASECVVW 240 CSGEKSSLPL YRTAIGKVGG LLYLDNRILS LRTELYAKGI QMYCAPTADA REEWRASMIH 300 IAIEGRCFVL SANQFCCRKD YSLPLKCIDG DSNGDPTGHN RTILAGANYQ GESLISADLD 360 LEETTPAKLE FGEVGTWYGT GFCWLVCKLT QPCSLSNCCE DSSFR

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MDSQTQSVDQ QQQEEENEQR PFLPENAEEG GPTSLQQSKK RRRYKGDRHI KVEGRDRRIR  60
IPLTCCSGLF RLTREMGHRT NGETIQWLLQ QTRPDLVPPD PVTHPTLLFA SAPAYMEKGR  120
VRATVVQAST VFFDTPATLD KAESLVAGSA AYGSQGCPFE SPNEDNQQLP KYHASAIEVA  180
GPGVDRLVKS SCRYKVHLVM GVVEKDGFYL FSTILFFDLV GQYLGKHRKI MRSASECVVW  240
CSGEKSSLPL YRTAIGKVGG LLYLDNRILS LRTELYAKGI QMYCAPTADA REEWRASMIH  300
IAIEGRCFVL SANQFCCRKD YSLPLKCIDG DSNGDPTGHN RTILAGANYQ GESLISADLD  360
LEETTPAKLE FGEVGTWYGT GFCWLVCKLT QPCSLSNCCE DSSFR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3wuy_A	6e-12	120	313	15	228	Nitrilase
3wuy_B	6e-12	120	313	15	228	Nitrilase
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.2522	0.0	ovule

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, cotyledons, leaves and flowers. {ECO:0000269\|PubMed:10574458}.

Functional Description ? help Back to Top
Source	Description
UniProt	Highly specific for beta-cyano-L-alanine (Ala(CN)). Low activity with 3-phenylpropionitrile (PPN). Not associated with auxin production but may be involved in cyanide detoxification. {ECO:0000269\|PubMed:10574458, ECO:0000269\|PubMed:11060302}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by abscisic acid or by 1-aminocyclopropane-1-carboxylic acid (ACC). {ECO:0000269\|PubMed:10574458}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017613338.1	0.0	PREDICTED: bifunctional nitrilase/nitrile hydratase NIT4B-like isoform X3
Swissprot	Q42966	6e-91	NRL4B_TOBAC; Bifunctional nitrilase/nitrile hydratase NIT4B
TrEMBL	A0A0B0N152	0.0	A0A0B0N152_GOSAR; Bifunctional nitrilase/nitrile hydratase NIT4B
STRING	Gorai.009G398700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20587	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	2e-18	TCP family protein

Publications ? help Back to Top
Dohmoto M,Sano J,Tsunoda H,Yamaguchi K Structural analysis of the TNIT4 genes encoding nitrilase-like protein from tobacco. DNA Res., 1999. 6(5): p. 313-7 [PMID:10574458] Piotrowski M,Schönfelder S,Weiler EW The Arabidopsis thaliana isogene NIT4 and its orthologs in tobacco encode beta-cyano-L-alanine hydratase/nitrilase. J. Biol. Chem., 2001. 276(4): p. 2616-21 [PMID:11060302]