PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A04G0530
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 590aa    MW: 64743.7 Da    PI: 7.9128
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A04G0530genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_121.74.3e-07239294156
                  XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                  eke +r rr   NRe+Ar   +R++a +e+L+ kv  L++eN+ Lk   e   ke+
  Gh_A04G0530 239 EKEARRLRRILANRESARQTIRRRQALCEKLTLKVTDLTQENENLKRAKELALKEY 294
                  799******************************************94444444555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.6E-4236288No hitNo description
SMARTSM003385.9E-7239303IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.3E-5243293No hitNo description
CDDcd147022.16E-13244295No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MELGRGLLSS SCASPTADAA EDALAADRMD MEAAEILAAL AHSKKWVAVS VSAEFGAKWG  60
CKGRRLRKRA SISTESPPSG VGSNPVQSGS DLAEQDQATI GQEQSQVIST SVVIESVVAE  120
SLNASHPCAE RYPSNGVLRS SQNLTKAEKE TCRLRRMLTH KESDWQMIHE RPILFSTVGI  180
SEKDIWEDSQ LNEMTGNNAL INPVKTEQNA ESVRSSPAGA IKHMSGGGGR SRQNLTEAEK  240
EARRLRRILA NRESARQTIR RRQALCEKLT LKVTDLTQEN ENLKRAKELA LKEYHSQDSA  300
NKHLKAEMAK ALKADEGKTT AELQLDHHIS GPSGNYPYFF YNQHHFLPFC WPSSVQSSHP  360
VQSQCGQNAI FVPSSISSPA NGRLDSSFNQ ESPINVNGPK TALYVVPYPW FFSLPDQRSG  420
LHPQPSCGTK DIEDETSVSN HFNAGCHLKP VMNEKFNSSL PVEVEKEAYE PIEASPNSKN  480
CTSVKLPADV GGHCMSYIKE EVLVPGPLCS AGTTFENRTD HVVKTEEAPI GAFHFVGALP  540
EENKESKSYT SKKVLDAVAA AEARKRRKEL TKLKNLHGRH RSPLSLSAKI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1563568RKRRKE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016738412.10.0PREDICTED: uncharacterized protein LOC107948390 isoform X1
TrEMBLA0A1U8NH780.0A0A1U8NH78_GOSHI; uncharacterized protein LOC107948390 isoform X1
STRINGGorai.009G405400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112112428
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19490.13e-42bZIP family protein