PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A04G0563

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 224aa MW: 26326.1 Da PI: 9.585

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A04G0563	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	50.3	4e-16	61	114	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t+eqle Le F+++ +++ +++ +L+++lg + rq+ vWFqNrRa++k Gh_A04G0563 61 KKKRLTNEQLEWLEMSFQEDIKLDPRRKMKLSRELGRQPRQIAVWFQNRRARWK 114 56679************************************************9 PP
2	HD-ZIP_I/II	104.5	8.7e-34	60	152	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekk+rl++eq++ LE+sF+e+ kL+p+rK++l+reLg qprq+avWFqnrRAR+k+k+lE+ ++aL++++ +++e+++L++ev++L++ l+e Gh_A04G0563 60 EKKKRLTNEQLEWLEMSFQEDIKLDPRRKMKLSRELGRQPRQIAVWFQNRRARWKAKELERLCNALQHHLHLVSKETQKLQHEVSKLKAMLRE 152 69**************************************************************************************98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.196	56	116	IPR001356	Homeobox domain
SMART	SM00389	4.1E-13	58	120	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.68E-16	60	125	IPR009057	Homeodomain-like
Pfam	PF00046	1.6E-13	61	114	IPR001356	Homeobox domain
CDD	cd00086	3.96E-14	61	117	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.4E-17	66	116	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MEWNGTLSFV PGQPPSLTSL YNYNYDQYFP GMEMMNVGLA EAAAMEKKKK KKKIYMNNEE 60 KKKRLTNEQL EWLEMSFQED IKLDPRRKMK LSRELGRQPR QIAVWFQNRR ARWKAKELER 120 LCNALQHHLH LVSKETQKLQ HEVSKLKAML REQPTRNQVS TGYTEISGEE TIESTLIHCS 180 NKYMVVPNNH HPIADQCSYL FNVDKNNPNP VGSTYWGEQL PTNP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	46	52	KKKKKKK
2	46	63	KKKKKKKIYMNNEEKKKR
3	49	63	KKKKIYMNNEEKKKR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX614786	0.0	JX614786.1 Gossypium hirsutum clone NBRI_GE58425 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016739491.1	1e-169	PREDICTED: putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A1U8NKG3	1e-168	A0A1U8NKG3_GOSHI; putative homeobox-leucine zipper protein ATHB-51
STRING	Gorai.009G409600.1	1e-152	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM28463	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	5e-35	homeobox 51