PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A04G0641

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

S1Fa-like

Protein Properties

Length: 82aa MW: 9146.83 Da PI: 10.3548

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A04G0641	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	136.3	7.2e-43	17	82	5	70
S1FA 5 kveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 ++e kG+nPGlivllvvgglll+flvgny+ly yaqk+lPPrkkkP+skkk+k+e+lkqGv++PGe Gh_A04G0641 17 ETEGKGFNPGLIVLLVVGGLLLTFLVGNYVLYSYAQKTLPPRKKKPISKKKMKKERLKQGVSAPGE 82 6799*************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD019013	0.004	15	82	No hit	No description
Pfam	PF04689	1.2E-40	18	82	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 82 aa Download sequence Send to blast
MSDEFEFADK GNKIIYETEG KGFNPGLIVL LVVGGLLLTF LVGNYVLYSY AQKTLPPRKK 60 KPISKKKMKK ERLKQGVSAP GE

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016721521.1	3e-52	PREDICTED: DNA-binding protein S1FA-like
Refseq	XP_016738311.1	3e-52	PREDICTED: DNA-binding protein S1FA-like
Swissprot	Q7XLX6	2e-19	S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBL	A0A1U8M3Y7	8e-51	A0A1U8M3Y7_GOSHI; DNA-binding protein S1FA-like
STRING	Gorai.002G249300.1	8e-36	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2823	27	69

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]