PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A04G1016
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 195aa    MW: 22807.2 Da    PI: 10.6869
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A04G1016genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.61.6e-181762146
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                 k ienk  r vtfskRr gi KK +ELS+LC++e + i+fs+tgk 
  Gh_A04G1016 17 KMIENKEDRLVTFSKRRLGIYKKISELSILCGTENLFIVFSPTGKP 62
                 68******************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-23968IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.511969IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-221080IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-161131IPR002100Transcription factor, MADS-box
PfamPF003198.6E-211965IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-163146IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-164667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MASTGKKTRG RKKTQMKMIE NKEDRLVTFS KRRLGIYKKI SELSILCGTE NLFIVFSPTG  60
KPFSFGCQSI ESVSNRFLSR NRPINDNTNI LIEAYRMLRT NKLVQHYNEI HSQMDGIKRK  120
KKVLVSAQQT SETNNTNHWW KTPIHQCNPR ELDELYSRFS ELAHMFHIAW CKKIANTSSM  180
STSTYFGNGH HRREF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hbx_A7e-14273374SERUM RESPONSE FACTOR
1hbx_B7e-14273374SERUM RESPONSE FACTOR
1hbx_D7e-14273374SERUM RESPONSE FACTOR
1hbx_E7e-14273374SERUM RESPONSE FACTOR
1k6o_B8e-14273273Serum response factor
1k6o_C8e-14273273Serum response factor
1srs_A7e-14273374PROTEIN (SERUM RESPONSE FACTOR (SRF))
1srs_B7e-14273374PROTEIN (SERUM RESPONSE FACTOR (SRF))
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016673103.12e-69PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2P5X8591e-142A0A2P5X859_GOSBA; Uncharacterized protein
STRINGGorai.012G148000.11e-120(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.11e-26AGAMOUS-like 57