PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A04G1126
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 240aa    MW: 27625.7 Da    PI: 9.0761
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A04G1126genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.82.5e-108102192
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 
                  f k+l  s +  ++rl++p k   ++  + +++ +++ +++de+g+ W + +++rkk+g    vl+kGW  Fv+  +L+ gD v  +++ ++ s++ +
  Gh_A04G1126   8 FMKIL--SRTDIKARLSIPTKKK-RCflNFQNRHQVEFKVKDENGKDWVFCCSIRKKKGYrkPVLSKGWLPFVRCWKLEIGDGVRVYRMmDKdSKEYY 102
                  66777..66666788****9986.445855667889****************9966666566********************9988754233255444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-16397IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-12593IPR015300DNA-binding pseudobarrel domain
CDDcd100173.68E-166108No hitNo description
PROSITE profilePS508638.7276110IPR003340B3 DNA binding domain
PfamPF023625.4E-88100IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MAIEKPLFMK ILSRTDIKAR LSIPTKKKRC FLNFQNRHQV EFKVKDENGK DWVFCCSIRK  60
KKGYRKPVLS KGWLPFVRCW KLEIGDGVRV YRMMDKDSKE YYRIEVIKRR DSPLVRNHDA  120
EEPSALAVAS YVQNHDAEEP SALAVASYTD VEEEATVASN SSTGRTVNHE QTEGLQNQPG  180
LMFEYISLKP DITVSEPKVI ELFGLGSQEQ REMEHPSILA PHNKVEMPVS SSRAPYFKFL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2430831e-176AC243083.1 Gossypioides kirkii clone GKH003A06-jng, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017612803.15e-91PREDICTED: uncharacterized protein LOC108458073
RefseqXP_017612804.15e-91PREDICTED: uncharacterized protein LOC108458073
TrEMBLA0A2P5XTA31e-90A0A2P5XTA3_GOSBA; Uncharacterized protein
STRINGGorai.012G167300.11e-90(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1783547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.17e-08VP1/ABI3-like 3