PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A04G1130
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 149aa    MW: 17438.1 Da    PI: 10.0881
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A04G1130genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.57.2e-11895188
                 EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88
                 f+k lt+ dv k+  l++p +   ++     gk+    + +++d++g+ W+++++ rkk+    v t+GW  Fv+  +L +gD v  +++ ++
  Gh_A04G1130  8 FKKRLTKTDVEKR--LSIPSRKK-KCflnfRGKH--MAEFKVKDKHGKDWTFNCSTRKKDYPkPVVTSGWLLFVQWWNLAVGDEVKVYRKMDE 95
                 7888988888876..9***9985.5568775554..34899*************7655544369*******************9998866444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-16395IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-12791IPR015300DNA-binding pseudobarrel domain
CDDcd100171.76E-12795No hitNo description
PfamPF023623.9E-8893IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MAIEKELFKK RLTKTDVEKR LSIPSRKKKC FLNFRGKHMA EFKVKDKHGK DWTFNCSTRK  60
KDYPKPVVTS GWLLFVQWWN LAVGDEVKVY RKMDEAGEEH YRIEVAVATN STADGTVNDD  120
QTEKLHNQPF FEFISQKPDL NIGKSKLIN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1828KKRLTKTDVEKRLSIPSRKKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2430830.0AC243083.1 Gossypioides kirkii clone GKH003A06-jng, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017612803.16e-41PREDICTED: uncharacterized protein LOC108458073
RefseqXP_017612804.16e-41PREDICTED: uncharacterized protein LOC108458073
TrEMBLA0A2P5W6C21e-106A0A2P5W6C2_GOSBA; Uncharacterized protein
STRINGGorai.012G167500.14e-94(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2231223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.12e-07auxin response factor 4